Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00563 ATGGAGCTCGACGAGCACATTTTCTTGGAGGAGTTGATGGCTCTACGAAGAGATTCAAATTGGGACGCCATTCCAAATGAAATTAGCGATTTCTGTTGGAATGCTTGGGCATTTGATTACTGTTTCGATCAAAGCAGTATGAATTTCCACCCAAATTCTTCGTCGGAACCTCTCTCTGCGCAGAATCTGGACGAGTTTTACCATCCTTTGGGAAATGAGTTCTCAGTGCCAGGAATGGCCGATTCCGCCTATGCCGCCATGGAAGTAGAAGCGGCGCCTCTGCCATTTCAAGCAGAGCGTCCGAATGCGGAGCGAGAAGGAGAAGGAGAAGGAGAAGAAGAGGAGGAACTAGGTTTTCTTGCGGATGAGATTCAGAATATGGAGGTGGTTCAAGTTCAATCGGCTTGCAAAATGGAGCCGAATCAATCTCCAGACCTCCCTGTTTTCAACATCGGAACATGCTCCTCCATCGAACGAAAGAACAGATCGAAGAAATTGCAAGGCCAACCGTCAAAGAATCTGATGGCGGAGAGACGGAGAAGGAAGCGCTTGAACGATCGCCTCTCCATGCTCAGATCCATCGTGCCTAAGATCAGCAAGATGGACCGAACTGCGATTCTGGCAGATGCGATTGAGTACATGAAAGAATTGCTGGAGAAGATCGGGAATCTGCAGAGAGAAGTGGACGGATCAAATCCAAGGACGAATTCATTGAACAACACAAAACCGAGCGAATTGGTAGCGAGAAATTCACCAAAATTTGAGGTGGAAAGCAGAATGGGGAAGACGAGGATCGAGATTTGCTGTGCGGCGAAACCAGGATTGATATTATCGACGGTGAATACGATTGAAGCGTTGGGGCTTGAGATTCAACAGTGCGTTATTAGCAGCTTCAATGATTTCGCATTGCAAGCCACTTGTTCTTCTCAGGAAATGAAGCAGAGAATAGAACTGAAGCCTGGAGAAGTGAAGGAAGCTTTATTTAGGAATGCAGGTTATGGGGGAAGCTGCTTGTAG 1017 47.1 MELDEHIFLEELMALRRDSNWDAIPNEISDFCWNAWAFDYCFDQSSMNFHPNSSSEPLSAQNLDEFYHPLGNEFSVPGMADSAYAAMEVEAAPLPFQAERPNAEREGEGEGEEEEELGFLADEIQNMEVVQVQSACKMEPNQSPDLPVFNIGTCSSIERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIEYMKELLEKIGNLQREVDGSNPRTNSLNNTKPSELVARNSPKFEVESRMGKTRIEICCAAKPGLILSTVNTIEALGLEIQQCVISSFNDFALQATCSSQEMKQRIELKPGEVKEALFRNAGYGGSCL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2765253 2767379 + CmaCh05G005630.1 Cma05g00563 294681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00563 338 SMART finulus 174 223 IPR011598 GO:0046983
Cma05g00563 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Cma05g00563 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 235 IPR036638 GO:0046983
Cma05g00563 338 MobiDBLite consensus disorder prediction 159 182 - -
Cma05g00563 338 CDD ACT_UUR-ACR-like 263 304 - -
Cma05g00563 338 Pfam Helix-loop-helix DNA-binding domain 174 217 IPR011598 GO:0046983
Cma05g00563 338 Coils Coil 207 227 - -
Cma05g00563 338 PANTHER - 2 338 - -
Cma05g00563 338 Gene3D - 156 232 IPR036638 GO:0046983
Cma05g00563 338 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 338 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00563 Cma09g00606 CCT
Cma01g01461 Cma05g00563 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01461 Cma-Chr1:10276379 Cma05g00563 Cma-Chr5:2765253 1.64E-101 dispersed
Cma05g00563 Cma-Chr5:2765253 Cma09g00606 Cma-Chr9:2852285 1.09E-93 dispersed
Cma12g00174 Cma-Chr12:791251 Cma05g00563 Cma-Chr5:2765253 0 wgd
Cma03g00858 Cma-Chr3:6395689 Cma05g00563 Cma-Chr5:2765253 1.71E-80 wgd
Cma05g00563 Cma-Chr5:2765253 Cma07g00592 Cma-Chr7:2545979 5.09E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35067 PF00010 HLH 6.30E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00563 - - csv:101221329 517.309