Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00564 ATGTCTCCACCACTACTTAATGTTGGGGAGGGGGAGGAAAGTCGCAGCAATGTCACTCTGTTGGCTTCCTCGAGCTCTATGGAGAGTGTCAGTCAAAACAATTTGGGATTTGAAGAGCGTAATTACATGGGATTATCTGTATCTTCTTCAGAGGAAAGCTGTATGACTGCCACAAAGCCTAATGGTAACAAACACTTGCTGAATCTTAAGGCTACGGAATTGAGGCTAGGCATTCCTGGATCTGAATCCCCCGAGAGAGATCCAGATATCGGATTTCGTAGTTCTTCTCAACTTGATGAAAAAACACTATTTCCTTTGCACCCATCAGGTGATGGTCGCTACTCTTCACCACACAAGGCTGTGGTCTCAGGCAACAAAAGGGGGTTTTCAGATGCTATGGACGAATTCTCAGAGGGAAAATATAACGCTAACATAGGCTTGAAAGCTGGTTCTTTGCTAGAGAACCTTGGAAGTGAAATGGGGAAATTGAAAGAGGCAACTACACAAAAGGCTGTACAAGAGAGGTCTCTAGAAAATAGTGAAACTAGGCCATCTCAAAGCGAGGCTGCAAATAACAACACCAGCGCACCTGTTTCCAAGGCACAGGTTGTTGGTTGGCCGCCCATAAGATCTTTCAGAAAAAACACATTGGCTACAACTTCAAAGAACAATGATGAAGTTGATGGAAAGGCAATACCTGGTGCACTCTTTGTCAAAGTTAGCATGGATGGTGCTCCTTATCTGAGGAAGGTAGATCTGAGGAACTACTCTGCATACCAGAAGCTGTCTTCTGCCCTTGAAAAAATGTTCAGCTGTTTTACTATAGGTCAATATGGAGCTCATGGAGCTCTGGGCATGGAGAAAATGAGTGAGAGCAAGCTGAAAGATCTTCTTCATGGCTCAGAATATGTTCTAACATATGAGGATAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCGTGGGAGATGTTCATCAACTCTTGTAAGAGGCTGAGGATTATGAAGAGCTCGGATGCAATTGGCCTGGCTCCTAGGGCGGTGGAGAAGTGCCGGAACAGGAACTAG 1068 45.04 MSPPLLNVGEGEESRSNVTLLASSSSMESVSQNNLGFEERNYMGLSVSSSEESCMTATKPNGNKHLLNLKATELRLGIPGSESPERDPDIGFRSSSQLDEKTLFPLHPSGDGRYSSPHKAVVSGNKRGFSDAMDEFSEGKYNANIGLKAGSLLENLGSEMGKLKEATTQKAVQERSLENSETRPSQSEAANNNTSAPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVDGKAIPGALFVKVSMDGAPYLRKVDLRNYSAYQKLSSALEKMFSCFTIGQYGAHGALGMEKMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFINSCKRLRIMKSSDAIGLAPRAVEKCRNRN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2772489 2776728 + CmaCh05G005640.1 Cma05g00564 294682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00564 355 MobiDBLite consensus disorder prediction 164 200 - -
Cma05g00564 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 141 IPR003311 GO:0005634|GO:0006355
Cma05g00564 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 166 346 IPR003311 GO:0005634|GO:0006355
Cma05g00564 355 MobiDBLite consensus disorder prediction 170 200 - -
Cma05g00564 355 PANTHER AUXIN-RESPONSIVE PROTEIN 16 141 - -
Cma05g00564 355 PANTHER AUXIN-RESPONSIVE PROTEIN 166 346 - -
Cma05g00564 355 Pfam AUX/IAA family 72 346 IPR033389 -
Cma05g00564 355 Gene3D - 231 349 - -
Cma05g00564 355 SUPERFAMILY CAD & PB1 domains 232 336 - -
Cma05g00564 355 Coils Coil 163 183 - -
Cma05g00564 355 MobiDBLite consensus disorder prediction 80 94 - -
Cma05g00564 355 MobiDBLite consensus disorder prediction 77 120 - -
Cma05g00564 355 ProSiteProfiles PB1 domain profile. 235 337 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00564 K14484 IAA; auxin-responsive protein IAA - csv:101221088 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00564 Cma-Chr5:2772489 Cma17g00789 Cma-Chr17:6276892 4.51E-97 dispersed
Cma14g01847 Cma-Chr14:13150410 Cma05g00564 Cma-Chr5:2772489 2.43E-31 dispersed
Cma17g00132 Cma-Chr17:688600 Cma05g00564 Cma-Chr5:2772489 2.76E-41 dispersed
Cma12g00173 Cma-Chr12:778386 Cma05g00564 Cma-Chr5:2772489 0 wgd
Cma05g00564 Cma-Chr5:2772489 Cma07g00596 Cma-Chr7:2561158 3.58E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35068 PF02309 AUX_IAA 4.20E-91 CL0072 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00564 Cma_Chr05 FPKM 53.539986 56.91135 236.113159 240.219864 62.420086 61.117954 67.748962 30.084438 28.440258 32.3438