Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00566 ATGGGTACTGGTTGGAGGAAGGCCTTCTGTACTACTGTTTCTCGAGATTCAGATTCTAATTCAGAGAAACAGAGGAGTTCCGGCACCGCTAATCCCAGTCCTAGAAGCTGTGTCCGATTGGGTTTCTTCAGCAACCCTTCTACTCCTCGACTGCAGTCTAATCAGCCACTGACTAGCCCTGGCCTTCGCTGTCGGACAACTCACGACGCTGTTGAGAAGTCCACCACGCTCCAATGCAAGACCTCTTCTTCCTCTGCTTCTACTCCCAAATCTGCTAAATCTCAACGAGGGATTTTGGGTTCAAATCCGTCTTCTCCTCGTTCCCCTCTTAAACTCTCGCTTTTCAAGAACAGTTTCAAGTTTAGAAGTAGCTGTGGAATCTGTTTGAGTAGCGTGAAGACGGGACATGGGACGGCGATTTACACGGCGGAGTGTGGCCATGCGTTTCATTTTCCTTGTATAGCCGCTCATGTCAGAAACCACGCCTCTCTTGTTTGTCCAGTCTGCAACACCACATGGAAAGACGTTCCTCTGCTCGCCGCCCATAAAAATCTGGGCCCACTGACCCAACATGATTCTAAACCCAAGATTCAGGATAAACCCATGATTGAATCTTCCCCCACAGCCTTTAAATCCAAGCCATTGGAATTCAGGTCCTACGATGACGACGAGCCCCTTTTGTCCCCCACCACCGGCGGCCGGATTATCCCCATCCCTGAAGCAGATGAGAACCAAGAAGATGTTGAGGAATTTCAAGGCTTCTTTGTTAACCCAAAGCCGCCTTCGAGTTCCGTCAAATCTTTAAATCAGAGGACCAATGTTCAGGTCCGACTCCTCCCTGAAACGGCGCTGATTTCATCCGGACATACCCACGAGACTTACGCGGTGGCTCTGAAAGTAAAAGCGCCACCACCGCATCCGGCCAGAAACAGAGCCAACGCGAATTTATTAGACCCATCCCGACGTGCGCCGATCGATTTAGTGGCGGTGCTAGACGTAAGTGGAAGCATGACGGGGCCCAAATTGATGATGCTGAAACGAGCCATGCGATTGGTCATTTCGTCGTTGGGCTCGTCGGACCGACTCGCCGTCGTCGCTTTCTCCGCCACCCCCAAAAGGGTGTTGCCGTTGAGGAGAATGTCGGCTCAAGGCCAACGTGCAGCTCTGCACGTGATCGACGCGCTGGTCTGCAGCCAAGGATCCAGCGTGGGGGAGGCTTTGAGAAAGGCCACAAAAGTACTCGAGGACCGGCGAGAGAAAAACCCGGTTGCCAGTATCATGCTTCTATCCGACGGCCAAGACGAGCGGATCCATTCTAATCAACGGCATTTGAGGAAGCACGAGTCATCCACCCGGTTCGCCCATATAGAAATCCCGGTTCACGCATCCGGATTTGGAAAGAGCGGCGGATACTGTCAAGAACCGGCGGAGGACGCCTTTGCAAAATGCGTTAGCGGGTTATTAAGCGTGGTGGTTCAAGATCTCCGTATTCAGCTGGGCTTCCAGACCGGCTCCTCTCCCGTCGTGATCTCCGCCATATATTCCTGTACAGGACGGCCTACGGTCTGCAGCTTGGGTTCGGTCCGGCTCGGCGATTTATACGCCGAGGAGGAAAGGGAATTACTCGTAGAATTGAAGATTCCGACATCGGCGGCTGGGACCCACCACGTGATGACTATGCAGTGTCTCTACAAGGACCCATCCACACAAGAAGTAGTGTATAGCCGAGAACAAGACATCCTCATCGCACGCCCAATAGCCGTCGGATCATCCGCTCCGAAGTTCGAACGGCTGAGAAACACGTTCATAACAACCCGCGCTGTTGCAGAATCCAGGAGATTAATCGAATACGAAGATCATACAAGCGCGCATCATTTACTGGCGTCGGCGCGTGCATTACTAATCCAATCAGGATCAACCAGTGCTGACGTGTCCGTGCGTGAGCTGGAAGTAGAGCTGGCAGAGCTCCAATGGCGAAGGCAGCAACAATTTGAATTACATCAGCAGCAGCAGCAGCAGCATATAATGACGACAACGCCAGTTAGGAGAGGTGGCGGCGACAAGGAAGGTCCGACGATGGTGGACGAAAACGGAGAGCCGTTGACGCCGACGTCGGCGTGGAGAGCTGCGGAGAAGCTGGCGAGAGTGGCGATTATGAAAAAATCGCTGAGAAGTAGAGTCGGCGATTTGCACGGATTCGAAAACGCCAGGTTCTAG 2217 52.82 MGTGWRKAFCTTVSRDSDSNSEKQRSSGTANPSPRSCVRLGFFSNPSTPRLQSNQPLTSPGLRCRTTHDAVEKSTTLQCKTSSSSASTPKSAKSQRGILGSNPSSPRSPLKLSLFKNSFKFRSSCGICLSSVKTGHGTAIYTAECGHAFHFPCIAAHVRNHASLVCPVCNTTWKDVPLLAAHKNLGPLTQHDSKPKIQDKPMIESSPTAFKSKPLEFRSYDDDEPLLSPTTGGRIIPIPEADENQEDVEEFQGFFVNPKPPSSSVKSLNQRTNVQVRLLPETALISSGHTHETYAVALKVKAPPPHPARNRANANLLDPSRRAPIDLVAVLDVSGSMTGPKLMMLKRAMRLVISSLGSSDRLAVVAFSATPKRVLPLRRMSAQGQRAALHVIDALVCSQGSSVGEALRKATKVLEDRREKNPVASIMLLSDGQDERIHSNQRHLRKHESSTRFAHIEIPVHASGFGKSGGYCQEPAEDAFAKCVSGLLSVVVQDLRIQLGFQTGSSPVVISAIYSCTGRPTVCSLGSVRLGDLYAEEERELLVELKIPTSAAGTHHVMTMQCLYKDPSTQEVVYSREQDILIARPIAVGSSAPKFERLRNTFITTRAVAESRRLIEYEDHTSAHHLLASARALLIQSGSTSADVSVRELEVELAELQWRRQQQFELHQQQQQQHIMTTTPVRRGGGDKEGPTMVDENGEPLTPTSAWRAAEKLARVAIMKKSLRSRVGDLHGFENARF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2786674 2789489 + CmaCh05G005660.1 Cma05g00566 294684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00566 738 SMART VWA_4 324 505 IPR002035 -
Cma05g00566 738 MobiDBLite consensus disorder prediction 671 702 - -
Cma05g00566 738 CDD vWA_C3HC4_type 325 492 - -
Cma05g00566 738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 225 IPR013083 -
Cma05g00566 738 CDD RING-H2 125 170 - -
Cma05g00566 738 ProSiteProfiles VWFA domain profile. 326 513 IPR002035 -
Cma05g00566 738 Pfam von Willebrand factor type A domain 327 433 IPR002035 -
Cma05g00566 738 Pfam RING-like zinc finger 125 154 IPR001841 -
Cma05g00566 738 Coils Coil 646 666 - -
Cma05g00566 738 Gene3D von Willebrand factor, type A domain 326 486 IPR036465 -
Cma05g00566 738 ProSiteProfiles Zinc finger RING-type profile. 125 170 IPR001841 -
Cma05g00566 738 MobiDBLite consensus disorder prediction 9 39 - -
Cma05g00566 738 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 738 - -
Cma05g00566 738 SUPERFAMILY RING/U-box 124 175 - -
Cma05g00566 738 SUPERFAMILY vWA-like 324 493 IPR036465 -
Cma05g00566 738 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 738 - -
Cma05g00566 738 MobiDBLite consensus disorder prediction 10 39 - -
Cma05g00566 738 MobiDBLite consensus disorder prediction 76 106 - -
Cma05g00566 738 SMART ring_2 125 169 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00566 - - - csv:101220853 1239.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00566 Cma-Chr5:2786674 Cma20g00496 Cma-Chr20:2425047 1.22E-87 dispersed
Cma07g00370 Cma-Chr7:1580427 Cma05g00566 Cma-Chr5:2786674 4.00E-32 dispersed
Cma03g00609 Cma-Chr3:5360501 Cma05g00566 Cma-Chr5:2786674 1.35E-41 transposed
Cma12g00172 Cma-Chr12:768333 Cma05g00566 Cma-Chr5:2786674 0 wgd
Cma03g00860 Cma-Chr3:6402742 Cma05g00566 Cma-Chr5:2786674 0 wgd
Cma05g00566 Cma-Chr5:2786674 Cma07g00597 Cma-Chr7:2572992 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00566 Cma_Chr05 FPKM 11.917371 15.517394 11.754087 12.414088 10.540224 10.357249 9.130514 0.445505 0.397451 0.30385