Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00571 ATGGCTTTCCACTCAGCCTTCTTTCTTCTTCTGTTCTTGGCTTCCTCCATTGCTTCTTCTCAAGCTCTTACTGCCACCATAGCCAACCAGTCCCAGTTCTTCCTTCTCATGCAAACAACTGCCTCAGGTGAGCTCCTCTCTAATTGGGATCTTTCACAAGGAAAATCCTTCTGCAACTTCACTGGAATCCGCTGCAATGACCGTGGTCACGTCATTCGGATCGATATCTCCGGCCACCCTCTCTCCGGTACCTTCCCGGACGATGTATGCTCTTACCTGCCATCACTCAGAGTTCTTCGCCTCGCTGATACCGAATTGTCGGGGCGTTTTCCCTCAGGAATCACCAACTGTTCTCTCATTCAAGAGCTTGACATGAGTTCTCTATATCTCAATGGAACAATCCCGGATTTATCGCAAATGAAACAACTCCGTGTACTCGACCTCTCCTACAATTCCTTCACCGGCGATTTCCCCATGTCGGTTTTCGACCTTGTTAATCTCGAGATACTGAATTTCAACGAGAATTATAATCTCAACTTATGGAAATTACCTGAGAAGATCTCTGGATTGAAGAAGCTGAAATCTATGGTGTTGACAACATGTATGTTGGATGGAGAAATCCCTCGATCGATCGGGAACATGACGTCGCTTATTGATCTCGAACTAAGTGGGAACTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTGCTCAAGAACCTGCAACAACTTGAACTCTATTACAATGAACTCACAGGAAACATACCAGAAGAGCTCGGAAATCTAACCGAGCTCGTCGATGTTGACATGTCGGTGAACCTTTTGACAGGGGAGATTCCGGAATCTATATGCAAACTCCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTAACAGGAGAGATTCCAAGTGTATTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAATTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCTATGGTCGTCGTCGACTTGTCGGAGAATCGCCTGTCGGGGCCATTGCCATTGGATATATGCAGAGGAGGGGAATTGCTCTACTTTCTTGTTCTTCAAAACAGCCTTTCCGGAGAAATTCCGGCGAGTTTTGCTGAATGCCGGTCACTTTTAAGGTTTAGAATTAGTTTCAATCAGCTGGTCGGAGCAATTCCCGAAGGTGTTCTTGGTCTCCCCCATGTTTCAATCATTGATGTTGCTCATAATAACCTCACTGGTTCCATTTCAAATTCAATCTCACAGGCTAGAAATTTGTCGGAATTGTTCTTACAAAAAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGCAGCCACCAATCTGGTGAAGCTAGATCTCAGTAACAATCTCCTCTCCGGCGCAGTGCCGCCGCAGATTGGTAGCCTGAAGAAACTAAATCTGGTGATGTTACAGGGAAACCAATTGGATTCTTCAATCCCTAGTTCATTGACATCGTTAAAATCCCTCAATGTTCTTGATCTCTCAAACAATCGTTTATCCGGGAAAATCCCAGAAAGTTTGGGTAAATTGTTCCCAAGTTCTTTGAATTTCTCGAACAATCAACTTTCCGGTCCGATTCCGATGTCTTTGATCAAACAAGGGTTAGCCGATAGCTTCTCCGGCAACCCAAATCTCTGTCTTCCACCGGCGTATTTTATTTCATCGGATCAGAAATTCCCCATTTGTTCACAATTTTCCTTCAAAAAACGTCTAGATTTCATCTGGGTAATCGTAATTCCGTTGCTTATTTTCTTCACCGGCGCCGTTCTGTTTCTAAAACGAAGAAAATCACCAGAGATCGAAAACGAAGAAACCCTCTGTTCGTCGTTCTTCCATAAACAGAGCTTCGACCAAAACAGGATTCTCGAATCCATGGCGGAAAAGAACATCGTCGGCCACAGCGGATCGGGAACGGTTTACAAAATCGAGCTCGGAAACGGAGAAATCGTCGCCGTGAAAAGGCTATGGAATCGAAGAACGAAACATTTCTTCGACAAGGAATTGAAAACAGAGGTCGAAACCCTAGAAACTATCAGACATAAGAACATCGTGAAACTCCACAGCTACTTTTCCGGTCGAAATTGCAGCCTTCTGGTTTACGAATACATCCCAAACGGAAACCTATGGGACGCCCTTCATAAAGGGTGGGTTTATCTCGATTGGCCGACGCGCCGCCGCATCGCGGTGGGGATCGCCCAAGCCCTCGCCTATCTCCACCACGATCTCTCGCCGCCCGTAATCCACAGAGACATCAAAACCACAAACATTCTATTAGATGAAAATTACGAACCCAAAGTGTCAGATTTCGGCATAGCCAAAGTTCTTCAAGGAACCAAAGATTCAACGAACTCTGTAATCGCCGGAACATACGGCTACTTAGCTCCCGAATATGCATATTCATCGAAGGAGACAACGAAGAGCGACGTGTATAGCTTTGGGGTGGTGTTAATGGAGCTGATCACCGGGAAGACGCCGATTGCGGCGGAGTACGGCGAGAACAAGAACATTGTGTTCTGGGTTTCGAATAAAATGGACACAAAAGAAGGGGTTCTTGAGATTCTTGACAAGAGATTAAAAGGGTTGTTCATGGATGAGATGGTTAAGGCCTTGAGGATCGCCATTCGCTGCACTTACAAGAATCCAGCGCTCCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTCCAAGAGGTCAAAAAGGGCGAAGATACGTATGATGTCACTCAAATAAAGTACCCTTTTTGA 2790 45.2 MAFHSAFFLLLFLASSIASSQALTATIANQSQFFLLMQTTASGELLSNWDLSQGKSFCNFTGIRCNDRGHVIRIDISGHPLSGTFPDDVCSYLPSLRVLRLADTELSGRFPSGITNCSLIQELDMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFDLVNLEILNFNENYNLNLWKLPEKISGLKKLKSMVLTTCMLDGEIPRSIGNMTSLIDLELSGNFLKGEIPKEISLLKNLQQLELYYNELTGNIPEELGNLTELVDVDMSVNLLTGEIPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVVDLSENRLSGPLPLDICRGGELLYFLVLQNSLSGEIPASFAECRSLLRFRISFNQLVGAIPEGVLGLPHVSIIDVAHNNLTGSISNSISQARNLSELFLQKNRISGVIPPEISAATNLVKLDLSNNLLSGAVPPQIGSLKKLNLVMLQGNQLDSSIPSSLTSLKSLNVLDLSNNRLSGKIPESLGKLFPSSLNFSNNQLSGPIPMSLIKQGLADSFSGNPNLCLPPAYFISSDQKFPICSQFSFKKRLDFIWVIVIPLLIFFTGAVLFLKRRKSPEIENEETLCSSFFHKQSFDQNRILESMAEKNIVGHSGSGTVYKIELGNGEIVAVKRLWNRRTKHFFDKELKTEVETLETIRHKNIVKLHSYFSGRNCSLLVYEYIPNGNLWDALHKGWVYLDWPTRRRIAVGIAQALAYLHHDLSPPVIHRDIKTTNILLDENYEPKVSDFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKETTKSDVYSFGVVLMELITGKTPIAAEYGENKNIVFWVSNKMDTKEGVLEILDKRLKGLFMDEMVKALRIAIRCTYKNPALRPAMGEVVQLLQEVKKGEDTYDVTQIKYPF 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2824500 2827474 + CmaCh05G005710.1 Cma05g00571 294689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00571 929 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 918 - -
Cma05g00571 929 Pfam Protein kinase domain 643 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00571 929 Gene3D Ribonuclease Inhibitor 179 282 IPR032675 -
Cma05g00571 929 Gene3D Ribonuclease Inhibitor 288 571 IPR032675 -
Cma05g00571 929 Gene3D Phosphorylase Kinase; domain 1 615 718 - -
Cma05g00571 929 SUPERFAMILY L domain-like 269 567 - -
Cma05g00571 929 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 3 918 - -
Cma05g00571 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672|GO:0006468
Cma05g00571 929 Gene3D Ribonuclease Inhibitor 33 178 IPR032675 -
Cma05g00571 929 SMART LRR_typ_2 93 117 IPR003591 -
Cma05g00571 929 SMART LRR_typ_2 502 526 IPR003591 -
Cma05g00571 929 SMART LRR_typ_2 238 262 IPR003591 -
Cma05g00571 929 SMART LRR_typ_2 286 310 IPR003591 -
Cma05g00571 929 SMART LRR_typ_2 164 190 IPR003591 -
Cma05g00571 929 SMART LRR_typ_2 455 478 IPR003591 -
Cma05g00571 929 SUPERFAMILY RNI-like 70 350 - -
Cma05g00571 929 SMART serkin_6 641 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00571 929 ProSiteProfiles Protein kinase domain profile. 641 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00571 929 ProSiteProfiles Leucine-rich repeat profile. 504 526 IPR001611 GO:0005515
Cma05g00571 929 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515
Cma05g00571 929 PRINTS Leucine-rich repeat signature 457 470 - -
Cma05g00571 929 PRINTS Leucine-rich repeat signature 502 515 - -
Cma05g00571 929 SUPERFAMILY Protein kinase-like (PK-like) 622 910 IPR011009 -
Cma05g00571 929 Gene3D Transferase(Phosphotransferase) domain 1 719 926 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00571 Cma09g00611 CCT
Cma01g01455 Cma05g00571 CCT
Cma05g00571 Cma12g00230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00571 Cma-Chr5:2824500 Cma09g00612 Cma-Chr9:2893612 0 dispersed
Cma12g00230 Cma-Chr12:1131420 Cma05g00571 Cma-Chr5:2824500 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68577 PF00069 Pkinase 7.40E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00571 - - csv:101220145 1549.64