Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00584 ATGGAACCCCCTGAACATTTCCACCTTAAAGCCTACACCTCCACCCACTCCTCCTCCGATCACCACCACACCGCCGCCGCTGAACACGACCTCTTCTTCGTCGAGAACCTCCTCGATTTCTCCGACGACCACCACGCCGACGCCGACGCCGACGCCGGGTTATTATCCGACAATACTAATAATAATCATCATAATACTAATACTCCCAGCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGATTTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAACTTGGAATTAATTACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGCCCCCCCGAAACGCCGCCGCTATCTTCAACCCGGGTGTTGTTTCCGTTCCAGCGAAGGCACGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCTCTCCTTCTTCCTCTTTCTCCGACCACATCCTCGTCTGAATCCGACATTAACGCTGAACCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCGAAGAAGAAGGATAGTCCGGAGGGTGGAGTGTCTCCTGCGGGAGAGGAGCGTAGGTGCATGCATTGTGCCACCGATAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAACGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTACGGCGGCAGAAGGAGATTATTAGAGGCCAACAACAACCGCAGCCATTGGTTTTGGATCATCACCGCCAAGACCTCATATTTGATGCTTCCAGCTGTGATAATTATCTTATCCATCAACACGTAGGTCCCGATTTCCGGCAGCTCATCTGA 1026 52.83 MEPPEHFHLKAYTSTHSSSDHHHTAAAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVPPRNAAAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAPPKAVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLDHHRQDLIFDASSCDNYLIHQHVGPDFRQLI 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2900468 2901893 - CmaCh05G005840.1 Cma05g00584 294702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00584 341 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 MobiDBLite consensus disorder prediction 51 74 - -
Cma05g00584 341 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 MobiDBLite consensus disorder prediction 1 20 - -
Cma05g00584 341 PANTHER GATA TRANSCRIPTION FACTOR 1 341 - -
Cma05g00584 341 MobiDBLite consensus disorder prediction 54 74 - -
Cma05g00584 341 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 PIRSF Txn_fac_GATA_plant 12 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cma05g00584 341 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 MobiDBLite consensus disorder prediction 183 226 - -
Cma05g00584 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 289 - -
Cma05g00584 341 Gene3D - 225 304 IPR013088 GO:0006355|GO:0008270
Cma05g00584 341 PANTHER GATA TRANSCRIPTION FACTOR 1 341 - -
Cma05g00584 341 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00584 - - - csv:101205219 356.295
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00584 Cma-Chr5:2900468 Cma09g00633 Cma-Chr9:2992308 5.20E-92 dispersed
Cma20g00811 Cma-Chr20:3817823 Cma05g00584 Cma-Chr5:2900468 5.66E-42 dispersed
Cma12g00243 Cma-Chr12:1222070 Cma05g00584 Cma-Chr5:2900468 4.06E-120 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00584 . 76 341 C2C2-Gata Transcription Factor Family AT5G25830 55.3 2.0e-65 246.9
Cma16g00644 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.8 1.3e-62 237.7
Cma03g00704 CCT,ECH 99 282 C2C2-Gata Transcription Factor Family AT5G66320 50.5 1.3e-43 174.5
Cma06g00812 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 3.9e-132 469.2
Cma16g01108 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 51.4 4.3e-131 465.7
Cma19g00400 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.6 2.0e-128 456.8
Cma02g01569 . 633 1129 C2C2-Gata Transcription Factor Family AT4G17570 51.6 6.1e-125 445.3
Cma06g00812 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.8 9.8e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35069 PF00320 GATA 1.70E-15 CL0167 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00584 Cma_Chr05 FPKM 8.034564 8.161695 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0