Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00584 | ATGGAACCCCCTGAACATTTCCACCTTAAAGCCTACACCTCCACCCACTCCTCCTCCGATCACCACCACACCGCCGCCGCTGAACACGACCTCTTCTTCGTCGAGAACCTCCTCGATTTCTCCGACGACCACCACGCCGACGCCGACGCCGACGCCGGGTTATTATCCGACAATACTAATAATAATCATCATAATACTAATACTCCCAGCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGATTTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAACTTGGAATTAATTACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGCCCCCCCGAAACGCCGCCGCTATCTTCAACCCGGGTGTTGTTTCCGTTCCAGCGAAGGCACGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCTCTCCTTCTTCCTCTTTCTCCGACCACATCCTCGTCTGAATCCGACATTAACGCTGAACCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCGAAGAAGAAGGATAGTCCGGAGGGTGGAGTGTCTCCTGCGGGAGAGGAGCGTAGGTGCATGCATTGTGCCACCGATAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAACGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTACGGCGGCAGAAGGAGATTATTAGAGGCCAACAACAACCGCAGCCATTGGTTTTGGATCATCACCGCCAAGACCTCATATTTGATGCTTCCAGCTGTGATAATTATCTTATCCATCAACACGTAGGTCCCGATTTCCGGCAGCTCATCTGA | 1026 | 52.83 | MEPPEHFHLKAYTSTHSSSDHHHTAAAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVPPRNAAAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAPPKAVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLDHHRQDLIFDASSCDNYLIHQHVGPDFRQLI | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2900468 | 2901893 | - | CmaCh05G005840.1 | Cma05g00584 | 294702 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00584 | 341 | CDD | ZnF_GATA | 230 | 277 | IPR000679 | GO:0006355|GO:0043565 | |
Cma05g00584 | 341 | MobiDBLite | consensus disorder prediction | 51 | 74 | - | - | |
Cma05g00584 | 341 | SMART | GATA_3 | 225 | 275 | IPR000679 | GO:0006355|GO:0043565 | |
Cma05g00584 | 341 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma05g00584 | 341 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 341 | - | - | |
Cma05g00584 | 341 | MobiDBLite | consensus disorder prediction | 54 | 74 | - | - | |
Cma05g00584 | 341 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 256 | IPR000679 | GO:0006355|GO:0043565 | |
Cma05g00584 | 341 | PIRSF | Txn_fac_GATA_plant | 12 | 318 | IPR016679 | GO:0003677|GO:0005634|GO:0045893 | |
Cma05g00584 | 341 | Pfam | GATA zinc finger | 231 | 264 | IPR000679 | GO:0006355|GO:0043565 | |
Cma05g00584 | 341 | MobiDBLite | consensus disorder prediction | 183 | 226 | - | - | |
Cma05g00584 | 341 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 227 | 289 | - | - | |
Cma05g00584 | 341 | Gene3D | - | 225 | 304 | IPR013088 | GO:0006355|GO:0008270 | |
Cma05g00584 | 341 | PANTHER | GATA TRANSCRIPTION FACTOR | 1 | 341 | - | - | |
Cma05g00584 | 341 | ProSiteProfiles | GATA-type zinc finger domain profile. | 225 | 261 | IPR000679 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00584 | Cma-Chr5:2900468 | Cma09g00633 | Cma-Chr9:2992308 | 5.20E-92 | dispersed | |
Cma20g00811 | Cma-Chr20:3817823 | Cma05g00584 | Cma-Chr5:2900468 | 5.66E-42 | dispersed | |
Cma12g00243 | Cma-Chr12:1222070 | Cma05g00584 | Cma-Chr5:2900468 | 4.06E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35069 | PF00320 | GATA | 1.70E-15 | CL0167 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00584 | - | - | csv:101205219 | 356.295 |