Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00584 ATGGAACCCCCTGAACATTTCCACCTTAAAGCCTACACCTCCACCCACTCCTCCTCCGATCACCACCACACCGCCGCCGCTGAACACGACCTCTTCTTCGTCGAGAACCTCCTCGATTTCTCCGACGACCACCACGCCGACGCCGACGCCGACGCCGGGTTATTATCCGACAATACTAATAATAATCATCATAATACTAATACTCCCAGCAGCTGCTTCCACGATAATGGGAACTCCGCCCAACTAACTTCCTTTCTGGACCACGTTAACTTACCCGACGCCCATTTCTCCGCCGAACTCGCTATTCCGTATGATGATTTACTTGAATTGGAATGGCTTTCGAATTTCGTAGAGGAATGCGAGTACATCCAAAACTTGGAATTAATTACCGGAGTCAAAGTCAAACCCCACGAACCCACCGCCGTGCCCCCCCGAAACGCCGCCGCTATCTTCAACCCGGGTGTTGTTTCCGTTCCAGCGAAGGCACGTAGCAAACGTTCACGCGCCGTCGTATCCAATTGGAACAACTCTCTCCTTCTTCCTCTTTCTCCGACCACATCCTCGTCTGAATCCGACATTAACGCTGAACCACCGCAATTGGTCAAAAAAGCGCCGCCCAAGGCGGTGGTGACAGCGAAGAAGAAGGATAGTCCGGAGGGTGGAGTGTCTCCTGCGGGAGAGGAGCGTAGGTGCATGCATTGTGCCACCGATAAGACGCCGCAATGGCGGACTGGCCCAATGGGCCCAAAAACGCTATGTAACGCTTGTGGGGTTCGGTATAAATCCGGCCGCTTGGTGCCGGAGTACCGCCCTGCTGCTAGTCCTACCTTTGTGCTCACGAAACACTCCAATTCCCACCGGAAAGTTATGGAGCTACGGCGGCAGAAGGAGATTATTAGAGGCCAACAACAACCGCAGCCATTGGTTTTGGATCATCACCGCCAAGACCTCATATTTGATGCTTCCAGCTGTGATAATTATCTTATCCATCAACACGTAGGTCCCGATTTCCGGCAGCTCATCTGA 1026 52.83 MEPPEHFHLKAYTSTHSSSDHHHTAAAEHDLFFVENLLDFSDDHHADADADAGLLSDNTNNNHHNTNTPSSCFHDNGNSAQLTSFLDHVNLPDAHFSAELAIPYDDLLELEWLSNFVEECEYIQNLELITGVKVKPHEPTAVPPRNAAAIFNPGVVSVPAKARSKRSRAVVSNWNNSLLLPLSPTTSSSESDINAEPPQLVKKAPPKAVVTAKKKDSPEGGVSPAGEERRCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEIIRGQQQPQPLVLDHHRQDLIFDASSCDNYLIHQHVGPDFRQLI 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2900468 2901893 - CmaCh05G005840.1 Cma05g00584 294702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00584 341 CDD ZnF_GATA 230 277 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 MobiDBLite consensus disorder prediction 51 74 - -
Cma05g00584 341 SMART GATA_3 225 275 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 MobiDBLite consensus disorder prediction 1 20 - -
Cma05g00584 341 PANTHER GATA TRANSCRIPTION FACTOR 1 341 - -
Cma05g00584 341 MobiDBLite consensus disorder prediction 54 74 - -
Cma05g00584 341 ProSitePatterns GATA-type zinc finger domain. 231 256 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 PIRSF Txn_fac_GATA_plant 12 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cma05g00584 341 Pfam GATA zinc finger 231 264 IPR000679 GO:0006355|GO:0043565
Cma05g00584 341 MobiDBLite consensus disorder prediction 183 226 - -
Cma05g00584 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 289 - -
Cma05g00584 341 Gene3D - 225 304 IPR013088 GO:0006355|GO:0008270
Cma05g00584 341 PANTHER GATA TRANSCRIPTION FACTOR 1 341 - -
Cma05g00584 341 ProSiteProfiles GATA-type zinc finger domain profile. 225 261 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00584 Cma-Chr5:2900468 Cma09g00633 Cma-Chr9:2992308 5.20E-92 dispersed
Cma20g00811 Cma-Chr20:3817823 Cma05g00584 Cma-Chr5:2900468 5.66E-42 dispersed
Cma12g00243 Cma-Chr12:1222070 Cma05g00584 Cma-Chr5:2900468 4.06E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35069 PF00320 GATA 1.70E-15 CL0167 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00584 - - csv:101205219 356.295