Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00594 ATGAGCAGAAACGAAAACGCCACAACGTGTTCATCTCCGGAGCCGAACAAGAAACTCAAACGCATCAGAGACACAGAGGACTCGAAGCACCCGCTTTACAGAGGAGTCCGAATGAGGAATTGGGGGAAATGGGTGTCCGAAATTCGTGAGCCAAGAAAGAAATCCCGCATTTGGTTAGGCACTTTCCCGAGCCCTGAAATGGCTGCACGAGCCCACGATGTAGCCGCCTTAAGCATCAAAGGAAAAGCTGCAATCCTTAATTTCCCCGACCTGGTACACCTCCTTCCCCGCCCTGTCTCCCTTGCCCCTCGTGACGTTCAGGCCGCCGCCACTAAAGCCGCTCATATGAATCATTTCTCCTCTACTGATACTAATAACAACAATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGATGCCACCGAGGAGCTCACGGAGATCGTCCAGCTACCGAGTCTCGGAACGAGTTTCGACGGCGGCGGCGGTGGTGAGTTAGTGTTTTTTGACTCGGGGCAGGAATTGGAATCTGGGTGTTGGATGTACACGCCGCCATGGGTGCAGAGCTTGGAGGATTGTGATAATGATGATTATGGTAAGTTCGAAGGATTGCTGTGGGATTATTGA 852 56.34 MSRNENATTCSSPEPNKKLKRIRDTEDSKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGKAAILNFPDLVHLLPRPVSLAPRDVQAAATKAAHMNHFSSTDTNNNNSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSDATEELTEIVQLPSLGTSFDGGGGGELVFFDSGQELESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2958701 2959552 - CmaCh05G005940.1 Cma05g00594 294712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00594 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 184 266 - -
Cma05g00594 283 MobiDBLite consensus disorder prediction 1 15 - -
Cma05g00594 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 157 - -
Cma05g00594 283 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Cma05g00594 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 157 - -
Cma05g00594 283 MobiDBLite consensus disorder prediction 114 221 - -
Cma05g00594 283 CDD AP2 31 91 IPR001471 GO:0003700|GO:0006355
Cma05g00594 283 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Cma05g00594 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 184 266 - -
Cma05g00594 283 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Cma05g00594 283 MobiDBLite consensus disorder prediction 1 27 - -
Cma05g00594 283 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Cma05g00594 283 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Cma05g00594 283 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Cma05g00594 283 MobiDBLite consensus disorder prediction 112 221 - -
Cma05g00594 283 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00594 Cma-Chr5:2958701 Cma09g00635 Cma-Chr9:3002095 1.28E-07 dispersed
Cma06g00973 Cma-Chr6:6604162 Cma05g00594 Cma-Chr5:2958701 1.22E-39 dispersed
Cma09g00246 Cma-Chr9:1037948 Cma05g00594 Cma-Chr5:2958701 2.70E-24 dispersed
Cma09g01204 Cma-Chr9:7929262 Cma05g00594 Cma-Chr5:2958701 1.15E-25 dispersed
Cma16g00151 Cma-Chr16:665860 Cma05g00594 Cma-Chr5:2958701 1.89E-35 dispersed
Cma16g01125 Cma-Chr16:8654856 Cma05g00594 Cma-Chr5:2958701 1.60E-44 dispersed
Cma12g00253 Cma-Chr12:1285060 Cma05g00594 Cma-Chr5:2958701 1.86E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35070 PF00847 AP2 2.70E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00594 K09286 - csv:101206242 189.504