Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00599 ATGGTGAATTCTGTGGTGGCGCGTGCTACGAGCGATATGTTGATTGGTCCAGATTGGGCTATGAACATCGAGATCTGTGATATGCTCAACCATGACCCTGGGCAAGCGAGGGATGTTGTTAAAGGTATAAAGAAGCGCCTTGGAAGCAAGAACGCAAAAGTTCAACTTCTTGCCCTGACGCTGTTGGAAACAATCATTAAGAATTGTGGGGACATTGTTCATATGCATGTGGCAGAGAAGGGTCTTCTTCATGAGATGGTAAAAATGGTGAAGAAGAAGCCTGATTTTCGCGTCAAAGAGAAGATATTGACTCTGATAGATACTTGGCAAGAAGCTTTTGGAGGAGCTAGGGCGAGATATCCACAATATTATGCTGCATACCATGAATTGTTGCGTGCTGGGGCAGTTTTCCCCCAGAGATCTGAGAGCTCTGGGCCTGTATTCACCCCCCCACAAACACAACCGTTGGTATCTTTTCCTCCTAATCTGCGGAACCCCGATCGTAATCAGCAAGATGATGCTGAGACCTCAACGGAGTCCGAGTTTCCGACTTTGAGCCTGACTGAAATTCAAAATGCCCGTGGCATTATGGATGTCCTTTCAGAAATGGTTAATGCATTAGAACCAGGGAATAAAGAGGCTATCAGGCAGGAGGTTATTGTTGACTTGGTTGAACAGTGCCGTACTTACAAGCAGAGGGTGGTTCACCTTGTTAACTCAACCGCAGATGAGTCACTACTTTGCCAAGGACTTGCACTTAATGATGATCTTCAGAGGCTACTTGCGAGGCATGAATCGATTTCTTCTGGGAAACCTGTTGCTCAGAACCCAAAGTCTGGATCTGCTACAGCACACGTTGATGGAGACCGGCCTCTTATTGACACTGGAGATAACAGCAAACAGCCTGAGACAAAAGCTGCCTCAAATGCCGGTGAAGGTTCTCAAATCCTGAACCAGGGGTTGCTGCCGGCACCTGCTTCAACTAATGGTCCAGCTCCTCCAAGTAGGGTTGAACCCAGTGTGGACCTGCTAAGCGGTGACTTCAATTCACCAAAGGCAGAGACTTCATTGGCTCTTGTTCCTGTTGGAGAGCAACAACCTAATAATCCTCCTGCATCCGATCAAAATGCTCTTGTTCTTTTTGACATGTTCTCTGATGGTAACAATGCCTCTAATCCTGCAAATCCCCCTCCTATCAGTCCCGGTGGGCAATCCCCCCACCCACATGCTTCCCAATTTCAACAGCAACAGCAACAGCAGCAGCAGCCAAATGTTCACTCCCCGCAGGCTGGATTTTATCCAAATGGGAACGTTACGAACATGGGTTCGCCTAATTATGAGCAATCGATGTACATGCAGGGCCCAGGTTCTCCCTGGAATGGTCCAATTACTCAGCAGCAGCAGCAACTGCAGCAGCCCCCTTCACCTGGCTATGGTTTGCAAACAACCGGCGCATTGCCACCTCCTCCCTGGGAAGCTCAGTCTCCTGATGGTGGCAGCCCAGTATCAGGTTCTCATTACTCTCAACCAATGCAGGTTACTACTCAGGTTATTGTCTCACACGGACTCGGTGGACATCCCCAGGGACCTCAATCCATGGGGAATGAGGTTGTAGGCATAGGTATGTACATCCAGTCCATGACGAGTGGTCAAATGTCTAACGTCAATAGCCATGTTAATCCGAGCCATCAGTTGTTGCACCCACAGCAGATCCCAGGCATGCAAAATATGGTCATGGCAATGCCTCCACAGCATCCGCAAGCTAATCAGATGACACAACCTTATTACCCTCAACAGCAGATGTATGGCAACCACAACAACCAATACAACAACCCTAGCTATGGCTATGGTCATGGTCAATCACAAGTGCCCCAATATCTTGAGCAGCAAATGTATGGCCTATCAGTTGGAGATGACATGAGTATGAGCAGTTCGTCTTCTCAGACTTCTGCTTTATCCTATGTGCCTCCCATGAAGCCGGTCACTAAGCCAGAGGACAAACTTTTTGGGGATCTCGTCGACATTGCGAAATTCAAACCTGCGACGTCCGCTCCTGGCAGAGCTGGTAGCATTTCGTCTGCCGGTAATTTTGCTGGTTTGAGAATTCTAGGCTTGAAGCAGCTTGTCTCGTCTGGGAGAATCTATAATGCAGCAAGGTTGTTCAAGGAGTACAAAGAGGTTCAAAGAGAAAAGGTAGCAGATCCAGATATTCAGTTGGTTTGTGACGATTCCAATATTTTTAAATGGATAGCGCTAATCAAGGGACCATCAGAGACTCCTTTTGAAGGTGGTGTCTTCCAGCTTGCCTTATCCGTACCTGAGCAATACCCTTTGCAACCTCCTCAAGTGCGGTTCTTAACGAAGATTTTCCATCCAAATGTTCATTTTAAGACGGGTGAGATCTGCCTAGACATATTGAAGAACGCATGGAGCCCAGCATGGACTCTGCAATCTGTTTGTAGGGCTATAATCGCTTTGATGGCTCATCCCGAACCTGATAGCCCGCTAAACTGTGATTCTGGAAACCTTCTGCGTTCGGGCGATGTCCGAGGATATCAATCAATGGCAAGGATGTACACAAGGCTGGCTGCCATGCCCAAAAAGGGCTGA 2610 47.89 MVNSVVARATSDMLIGPDWAMNIEICDMLNHDPGQARDVVKGIKKRLGSKNAKVQLLALTLLETIIKNCGDIVHMHVAEKGLLHEMVKMVKKKPDFRVKEKILTLIDTWQEAFGGARARYPQYYAAYHELLRAGAVFPQRSESSGPVFTPPQTQPLVSFPPNLRNPDRNQQDDAETSTESEFPTLSLTEIQNARGIMDVLSEMVNALEPGNKEAIRQEVIVDLVEQCRTYKQRVVHLVNSTADESLLCQGLALNDDLQRLLARHESISSGKPVAQNPKSGSATAHVDGDRPLIDTGDNSKQPETKAASNAGEGSQILNQGLLPAPASTNGPAPPSRVEPSVDLLSGDFNSPKAETSLALVPVGEQQPNNPPASDQNALVLFDMFSDGNNASNPANPPPISPGGQSPHPHASQFQQQQQQQQQPNVHSPQAGFYPNGNVTNMGSPNYEQSMYMQGPGSPWNGPITQQQQQLQQPPSPGYGLQTTGALPPPPWEAQSPDGGSPVSGSHYSQPMQVTTQVIVSHGLGGHPQGPQSMGNEVVGIGMYIQSMTSGQMSNVNSHVNPSHQLLHPQQIPGMQNMVMAMPPQHPQANQMTQPYYPQQQMYGNHNNQYNNPSYGYGHGQSQVPQYLEQQMYGLSVGDDMSMSSSSSQTSALSYVPPMKPVTKPEDKLFGDLVDIAKFKPATSAPGRAGSISSAGNFAGLRILGLKQLVSSGRIYNAARLFKEYKEVQREKVADPDIQLVCDDSNIFKWIALIKGPSETPFEGGVFQLALSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2991315 3001776 - CmaCh05G005990.1 Cma05g00599 294717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00599 869 ProSiteProfiles GAT domain profile. 181 269 IPR004152 GO:0035091|GO:0043130
Cma05g00599 869 CDD GAT_GGA_like_plant 189 267 - -
Cma05g00599 869 CDD UBCc 719 860 IPR000608 -
Cma05g00599 869 Gene3D Ubiquitin Conjugating Enzyme 715 864 IPR016135 -
Cma05g00599 869 SUPERFAMILY GAT-like domain 142 270 - -
Cma05g00599 869 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Cma05g00599 869 CDD VHS 2 132 - -
Cma05g00599 869 Gene3D - 1 146 IPR008942 -
Cma05g00599 869 SUPERFAMILY UBC-like 716 865 IPR016135 -
Cma05g00599 869 MobiDBLite consensus disorder prediction 405 479 - -
Cma05g00599 869 PANTHER TARGET OF MYB PROTEIN 1 1 681 - -
Cma05g00599 869 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Cma05g00599 869 PANTHER TOM1-LIKE PROTEIN 1 681 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cma05g00599 869 MobiDBLite consensus disorder prediction 297 325 - -
Cma05g00599 869 MobiDBLite consensus disorder prediction 142 167 - -
Cma05g00599 869 Pfam Ubiquitin-conjugating enzyme 719 859 IPR000608 -
Cma05g00599 869 Pfam GAT domain 195 269 IPR004152 GO:0035091|GO:0043130
Cma05g00599 869 Gene3D - 184 275 IPR038425 -
Cma05g00599 869 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 715 865 IPR000608 -
Cma05g00599 869 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Cma05g00599 869 MobiDBLite consensus disorder prediction 142 182 - -
Cma05g00599 869 MobiDBLite consensus disorder prediction 268 349 - -
Cma05g00599 869 SMART ubc_7 718 865 - -
Cma05g00599 869 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Cma05g00599 869 MobiDBLite consensus disorder prediction 384 508 - -
Cma05g00599 869 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 790 806 IPR023313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00599 - - - csv:101204650 1126.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00599 Cma12g00260 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00599 Cma-Chr5:2991315 Cma09g01055 Cma-Chr9:5513292 1.85E-100 dispersed
Cma15g00640 Cma-Chr15:3025875 Cma05g00599 Cma-Chr5:2991315 8.59E-87 dispersed
Cma01g01431 Cma-Chr1:10064395 Cma05g00599 Cma-Chr5:2991315 0 transposed
Cma06g00201 Cma-Chr6:1031437 Cma05g00599 Cma-Chr5:2991315 4.14E-81 transposed
Cma07g01376 Cma-Chr7:7856960 Cma05g00599 Cma-Chr5:2991315 2.32E-62 transposed
Cma12g00261 Cma-Chr12:1332575 Cma05g00599 Cma-Chr5:2991315 0 transposed
Cma12g00260 Cma-Chr12:1327402 Cma05g00599 Cma-Chr5:2991315 1.17E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g317 Blo01g01771 . . Bda03g00426 . Bpe02g00173 . Bma01g02552 Cmo05g00625 Cmo12g00213 . Cma05g00599 . Car12g00244 Sed01g1278 Cpe07g00224 . Bhi04g00831 Tan02g2574 Cmetu03g0651 . Hepe10g0349 . Lcy13g1394 . . . . . . . . . . . . . . Cme03g01732 . . . . . Bpe04g00392 . . . . . . Cma12g00260 . Car05g00542 Cpe11g00523 . . . . . . . . Cla08g01231 . . . . . . Lsi08g01094 . Chy03g01238 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00599 Cma_Chr05 FPKM 9.309358 10.873385 9.542878 9.16695 11.385532 13.0842 10.77098 10.125136 10.268853 9.217791