Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00608 ATGTCAGCCATGGAAGCTGAGAGAATGGAGAAAGAACAACAGCGGACCACCAGGAAAAGGCCTCGTTCCGCATGGGATGTGGTGCCATCCGAACAAGAGGCTAATAAGGCTTTGGTGGTGGTTAAGGATGAGGTCAAAAGGCATGCCTCGCCCCCGAGAAGAGACGATGATCGTGAAGGACACTATGTCTTCAACCTCGGCGAGAATCTCACTCCGAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGCTGGGACCGGCAAACTCGAGAATATGTAGCCATTAAGGTAGTTCGGAGCATAAGAAAGTACCGTGATGCAGCCATGGTTGAGGTGGATATACTTAAGCATCTTGCTCAGAATGACACAGGCTGCTTACGTTGTGTGCAGATTAGAAATTGGTTTGACTACCGCAATCACATATGTATAGTATTTGAGAGGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACCACCCATTCCCTGTGGATCTTGTTCGGGAGTTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGATTTACACTTAATCCACACAGACCTGAAGCCAGAAAATATACTTCTTGTGTCTTCTGAATATATAAAGCTTCCTGGTTGTAAGAGGGTTTCGTCGGATGAAACGCAATTCAGGTGCTTGCCCAAGTCTAGTGCAATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATGAGAATCATAGCTCCATTGTTTCTACGAGGCATTACAGAGCCCCTGAGGTTATTCTAGGTCTTGGATGGAGTTATCCATGCGATTTGTGGAGTATAGGTTGCATTCTTGTCGAACTGTGTTCGGGCAAAGCACTGTTCCAAACTCACGAGAACTTGGAGCATTTGGCAATGATGGAGAGGGTGTTGGGACCTATACCAGGGCACATGATTCAGAGTGCTGACCAAAACGCAGAAAAGTATTTCAAACGAGGTCTGCGACTAAACTGGCCCGAAGGAGCAGTTTCAAGAGAAAGCATTCGAGCCGTGAAGAAACTTGATCGTTTGAAGGATATGGTTTCACAACATGTGGGTTTCTCCAGGCTATTGACTGATTTGTTGTATGATCTATTGAAATACGACCCTTCGGAACGCCCAACAGCTCGACAAGCCCTTGACCATTCTTTCTTTAAGAGTATAGCATGA 1209 44.67 MSAMEAERMEKEQQRTTRKRPRSAWDVVPSEQEANKALVVVKDEVKRHASPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMVEVDILKHLAQNDTGCLRCVQIRNWFDYRNHICIVFERLGPSLFDFLKRNKYHPFPVDLVREFGRQLLESVAYMHDLHLIHTDLKPENILLVSSEYIKLPGCKRVSSDETQFRCLPKSSAIKLIDFGSTAFDNENHSSIVSTRHYRAPEVILGLGWSYPCDLWSIGCILVELCSGKALFQTHENLEHLAMMERVLGPIPGHMIQSADQNAEKYFKRGLRLNWPEGAVSRESIRAVKKLDRLKDMVSQHVGFSRLLTDLLYDLLKYDPSERPTARQALDHSFFKSIA 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3059476 3063735 + CmaCh05G006080.1 Cma05g00608 294726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00608 402 Pfam Protein kinase domain 74 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00608 402 SMART serkin_6 74 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00608 402 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 46 399 - -
Cma05g00608 402 PANTHER BNAA07G37640D PROTEIN 46 399 - -
Cma05g00608 402 MobiDBLite consensus disorder prediction 1 30 - -
Cma05g00608 402 SUPERFAMILY Protein kinase-like (PK-like) 61 401 IPR011009 -
Cma05g00608 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Cma05g00608 402 Gene3D Transferase(Phosphotransferase) domain 1 128 398 - -
Cma05g00608 402 CDD PKc_CLK 61 398 - -
Cma05g00608 402 ProSiteProfiles Protein kinase domain profile. 74 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00608 402 MobiDBLite consensus disorder prediction 1 26 - -
Cma05g00608 402 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00608 K08287 E2.7.12.1; dual-specificity kinase [EC:2.7.12.1] - csv:101210171 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00608 Cma-Chr5:3059476 Cma06g00323 Cma-Chr6:1522257 0 dispersed
Cma07g00876 Cma-Chr7:4124565 Cma05g00608 Cma-Chr5:3059476 2.03E-14 dispersed
Cma20g00539 Cma-Chr20:2597759 Cma05g00608 Cma-Chr5:3059476 8.64E-16 dispersed
Cma05g00608 Cma-Chr5:3059476 Cma13g00768 Cma-Chr13:6634688 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g364 . . . . Bpe02g01198 . . . Cmo05g00634 . . Cma05g00608 . . Sed01g1289 . . Bhi04g00814 Tan02g2583 Cmetu03g0841 . Hepe10g0340 . Lcy13g1385 . . . . . . . . . . Cone20ag0616 . . . Cme03g01723 . Blo18g00067 Bda01g00951 . . . Bma01g01330 . . . . . . . Car05g00551 Cpe11g00531 . . . . . . . . Cla08g01240 Cam08g1698 Cec08g1277 Cco08g1399 Clacu08g1394 . Cre08g1180 Lsi08g01102 . Chy03g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009152 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68579 PF00069 Pkinase 1.60E-51 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00608 Cma_Chr05 FPKM 5.346109 5.576896 9.08855 8.81816 13.025551 11.860247 11.073678 7.94622 8.583914 7.818967