Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00620 ATGTGGACTCATAATAAGGTTGTAAAGGAAAAGAAGGAGGCGGTCACCGGAAATCAATTGGTGGGAATCGCCATTGATAAGGACAAAGGAAGTCAAGTTGCTCTCAAATGGGCCACTGAGAATCTCCTTCTCAAGGGCCAAACTGCCATTCTCATCCATGTCAAACTCAGACCTTCCTCCCATTCTGGCTCGTTCCTGACTTCTCCTAAGGTAATGTCAACAACTGACAATGGCAATGGCAATAGCAATGTCTCGGTAAGCAAGGAAATTGATCCGAGCACGAGGGAGTTGTTCCTTCCTTTTCGATGCTTCTGTACCCGTAAAGATGTGTCTTGCAGAGACATCGTCATAGAAGATGTAGATGTTGGAAAAGCGCTGATCGAATATGTCTCTCAGGCTGGAATTGATAATTTGGTTGTCGGTGCCACGACTAGAAGTGGCTTTTTGAGATTCAAGACGATAGATATTCCGGGCAGTGTTATCAAAGGAGCACCAGACTTCTGCAATGTTTATGTCATATCAAGAGGGAAAATCCAAAATATGCGAACGGCGTCACGTCCTGCTCCTGCTTCTTCTCCTCTTCGAAGTTTATTGCTGAGCCAATCTGGTGTTGGATCACATTCAGCTGAATCACAATTTCCTCAGATTGAAAATATGAGACCCGAAAAGCCTCCCCTCGAAGCAGCACGCCGATCCCAGGACAACACCGAGTTCAGGTCACCGTTCACTAGGAAAGGCTACCATGGAAAAATGCCAGGGGAAATCAGTCTGCCAGATACCGATATTTCTTTTGTTAGCTCGGGAAGGCTGAGTGTTGACCGATTGTTCCCTACATTTTTTGACACCCCAGATTCAGGAAGGACTCCCCCACGACTGTCCAGTGGCAACGATTCTGATATATATGTTAGCTTCGAGTCACAGCAGTTCGGACGTAAATCATTGGATGTAAACTATCCACCTGAATTTTCATCGATGTTATCAGAAGATGATAGATTATCGACTTCGTCACAGAGTATGGAAGAAGTAGAGGCTGAGATGAGGAGGCTGAAGCTGGAACTAAAGCAAACTATGGAAATGTATAGCACAGCCTGCAAGGAAGCAATTACAGCTAAACAAAAGGCGATAGAGCTTCAGCGATGGAAATCCGAGGAAGAACAGAGATTAGAGGAGGCGAGACATGCAGAGGAAGCTGCGTTAGCGATGGTCGAGCAGGAAAAGGCAAAGTCTCGAGCTGCTATGGAGGCAGCTGAAGCATCTAAAAGGATCGCTGAGTTGGAAGCACGGAAGAGAATTAATGCGGAAATAAAAGCATTCAAGGAAGCAGATGAGAAGAAGAAGGCATTAGATGCTTTGGCAAACCAAGACGTCAGGTATCGGAAGTACTCGATCGAGGAGATCGAAGCTGCTACCGAGTTATTTTCAGAGTCTTTAAAGATTGGAGAGGGAGGTTATGGGCCTGTTTATAAAGGTTATTTAGACCACACACCAGTTGCAATTAAGGTATTACGTCCCGATGCGGCTCAAGGAAGGTCACAGTTCCAGAAAGAGGTCGAAGTACTTAGCTGCATACGACATCCGAACATGGTTCTTCTCCTTGGAGCATGCCCTGAATATGGCTGCTTGGTCTATGAGTTTATGGGACATGGTAGCTTGGATGACTGCCTCTTTCGCCGGGGAGATAACTCGAGACCTCTTTCTTGGCAACGTAGATTCAAAATTGCAGCTGAAATCGGCACTGCCTTGTTGTTCCTCCACCAGACTAAGCCTGAACCGCTCGTGCACCGTGATTTGAAGCCAGCCAACATCTTGCTCGATAACAACTACGTTAGCAAGATTAGCGATGTCGGTTTGGCTAGGCTTGTTCCCCCATCTATAGCAGACAGTGTGACACAATATCGAATGACTTCAACTGCTGGCACGTTCTGTTATATCGATCCCGAGTATCAACAAACCGGCATGCTCGGTGTAAAATCCGACGTATATTCTTTGGGGATCATGTTTTTGCAGCTGATTACAGCAAAGCCACCCATGGGATTGACTCACCATGTGGAAAGAGCTATTGAGAAAGGGACTTTGTCTGAAATTCTTGATCCATCTGTTACTGATTGGCCAGCTGAAGAAACCTCCTCCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAAGATCGACCCGATCTTTGTAAGGTCGTTCTCCCCAAACTCATCAAATTACAATCGCTAGCCGAAGCCAGCATGTACTCGTCGACGAGGGACGGCGTTAGCAGCCCTACGACTGTGTATTGTTCCATAGGACGAGGAAAAGGAAAGTGA 2319 46.18 MWTHNKVVKEKKEAVTGNQLVGIAIDKDKGSQVALKWATENLLLKGQTAILIHVKLRPSSHSGSFLTSPKVMSTTDNGNGNSNVSVSKEIDPSTRELFLPFRCFCTRKDVSCRDIVIEDVDVGKALIEYVSQAGIDNLVVGATTRSGFLRFKTIDIPGSVIKGAPDFCNVYVISRGKIQNMRTASRPAPASSPLRSLLLSQSGVGSHSAESQFPQIENMRPEKPPLEAARRSQDNTEFRSPFTRKGYHGKMPGEISLPDTDISFVSSGRLSVDRLFPTFFDTPDSGRTPPRLSSGNDSDIYVSFESQQFGRKSLDVNYPPEFSSMLSEDDRLSTSSQSMEEVEAEMRRLKLELKQTMEMYSTACKEAITAKQKAIELQRWKSEEEQRLEEARHAEEAALAMVEQEKAKSRAAMEAAEASKRIAELEARKRINAEIKAFKEADEKKKALDALANQDVRYRKYSIEEIEAATELFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQKEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMGHGSLDDCLFRRGDNSRPLSWQRRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDNNYVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDVYSLGIMFLQLITAKPPMGLTHHVERAIEKGTLSEILDPSVTDWPAEETSSFAELALKCAELRRKDRPDLCKVVLPKLIKLQSLAEASMYSSTRDGVSSPTTVYCSIGRGKGK 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3113792 3118255 + CmaCh05G006200.1 Cma05g00620 294738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00620 772 Gene3D HUPs 19 173 IPR014729 -
Cma05g00620 772 ProSiteProfiles Protein kinase domain profile. 473 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00620 772 Gene3D Phosphorylase Kinase; domain 1 451 545 - -
Cma05g00620 772 MobiDBLite consensus disorder prediction 207 253 - -
Cma05g00620 772 PANTHER OS02G0152300 PROTEIN 12 760 - -
Cma05g00620 772 SUPERFAMILY Protein kinase-like (PK-like) 456 733 IPR011009 -
Cma05g00620 772 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
Cma05g00620 772 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 23 172 - -
Cma05g00620 772 MobiDBLite consensus disorder prediction 223 244 - -
Cma05g00620 772 CDD STK_N 20 176 - -
Cma05g00620 772 Pfam Universal stress protein family 21 161 IPR006016 -
Cma05g00620 772 Gene3D Transferase(Phosphotransferase) domain 1 546 755 - -
Cma05g00620 772 Coils Coil 332 359 - -
Cma05g00620 772 SMART serkin_6 473 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00620 772 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE 12 760 - -
Cma05g00620 772 Pfam Protein kinase domain 475 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00620 772 Coils Coil 385 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00422 Cma-Chr5:1899419 Cma05g00620 Cma-Chr5:3113792 0 dispersed
Cma05g00620 Cma-Chr5:3113792 Cma11g01405 Cma-Chr11:9232327 0 dispersed
Cma01g01585 Cma-Chr1:10935651 Cma05g00620 Cma-Chr5:3113792 0 wgd
Cma12g00277 Cma-Chr12:1436928 Cma05g00620 Cma-Chr5:3113792 0 wgd
Cma05g00620 Cma-Chr5:3113792 Cma09g00539 Cma-Chr9:2408437 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68581 PF00069 Pkinase 6.30E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00620 - - csv:101214468 1194.87