Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00623 ATGACGGCACCGGTGTTGGTTGATGGGAAGGGGAAGAAGAATATTGAGAATTTGGTGTCTGCTACTAGGTCGTTGAAGGCTAGTTTAGAGAAATCTAGGGCTCTAGGATTTGCGTTGCAGAAAGCTGGGTCGAGATTGGAGGAGATTAGCCAAAGATTGCCGACTTTAGAAGCGGCTGTTCGGCCTATTCGTGCTGATAAGGAAGCCCTCGTCGCCGTCGGTGGCCATATAAACCGTGCTGTTGGCCCTGCGGCGGCGGTGCTTAAGGTTTTTGATGCTGTTCATGGCCTTGAAAAGTCTCTGTTATCGGACCCGCGGAATGATCTCCCTGGTTATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGATTCTTGGGAGATAACTGTGGGCTGGGAATCCAGTGGTTGGAGGACATAGTTGAGTATTTGGAAGATAATACTGTTGCTGATGAGAAATATCTTGGGAGTTTGAAGAACTCGTTGAAGAAACTGAGGGATTTACAGAGTGATGAGGAGAAGACTGAGCTTGATGGAGGCCTTTTGAATGCTGCTTTAGATAAACTAGAGAACGAGTTTAGGCGTCTGTTAACGGAGCACAGCGTTCCCCTTCCCATGTCTTCTGCGGCGTCTGTCAGTGACCAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTTATTCACAAACTTCAAGCCATTCTTGGGAGATTGATTGCTAATAAACGACTCGAACGATGCATATCCATTTACGTTGAAGTTCGTAGTTGTAACGTTAGGGCTAGTTTGCAGGCTCTTGGTTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGATGTACAGAGCATCGAGGGGTACATTGCGAAATGGGGAACACATTTGGAGTTTGCAGTGAAACATTTGTTTGAAGCTGAGTTCAAGCTTTGTAATGATGTTTTTGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACTCAAGCTGGTATTCTTGCATTTCTTCAATTTGGGAAAACTGTTACAGAAAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATCTTTGCATCCTTGAACAAACTGAGACTCGACTTTAATAGGCTGTTCGGCGGGGCTGCCTGTTTGGAAATTCAAAACTTGACTCGAGATCTAATTAAGAGGGTTATCGATGGCGTAGCCGAGATTTTCTGGGAACTTCTAGTTCAGGTGGAGCTCCAGAGGCAAAATCCTCCACCTTTAGATGGGGCAGTTTCAAGGTTGGTTAACTTCATTATCGATTACAGTAATAAACTGCTCAGCGATGGTTATAGGCCGATCCTGACCCAGGCCCTCGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGCTCTTCTTGTCGGTGAGGTAACGAACCTTGTCAAAGCCATTGAGCAGAATCTGGACACTTGGATAAAGGCTTATGAAGATTCGACCTTGTCGAACTTTTTCGCTATGAACAATCATTGGCATCTATACAAGCACCTCAAAGGAACGAAAGTCGGAGAACTAATGGTAGACAAAGTAAAGGAACATGAACAGTACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGTCATTTAAGCAGGGAGGGTTTGATTATGTTCTCAGGTGGACGAGCGACTGCTCGCGATCTTGTTAAGAAACGTTTAAAGACATTCAATGAAGCTTTTGAAGACATGTACAAGAAGCAGTCAAACTGGGTTATAACTGACAGAGAATTGAGGGAGAAGACATGCCAACTTATCGTTCAAACCATCGTGCCCGTTTACCGTAGCTACATGCAAAATTATGGCCCTCTGGTTGAGCAAGATGCAAGTTCGAGTAAGTATGCGAAGTACACCGTGCAGAATCTGGAGAAAATGTTGCTGTCCCTCTTTCACCCAAAGCCGCTTCGGTACAGCAGCCTCAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGGGCCGCAGATCATCGTCGTTCCAACTCCATGGTTCTGTGA 2049 44.9 MTAPVLVDGKGKKNIENLVSATRSLKASLEKSRALGFALQKAGSRLEEISQRLPTLEAAVRPIRADKEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLGIQWLEDIVEYLEDNTVADEKYLGSLKNSLKKLRDLQSDEEKTELDGGLLNAALDKLENEFRRLLTEHSVPLPMSSAASVSDQACIAPSPLPVTVIHKLQAILGRLIANKRLERCISIYVEVRSCNVRASLQALGLDYLEISVSEFNDVQSIEGYIAKWGTHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGVAEIFWELLVQVELQRQNPPPLDGAVSRLVNFIIDYSNKLLSDGYRPILTQALVIHRSWKKEKFQEALLVGEVTNLVKAIEQNLDTWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMVDKVKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSNWVITDRELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLFHPKPLRYSSLKVRQTSGKFSNGAADHRRSNSMVL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3128909 3130957 + CmaCh05G006230.1 Cma05g00623 294741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00623 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 14 671 IPR004140 GO:0000145|GO:0006887
Cma05g00623 682 Coils Coil 158 178 - -
Cma05g00623 682 Gene3D Exocyst complex component Exo70 137 655 - -
Cma05g00623 682 SUPERFAMILY Cullin repeat-like 87 649 IPR016159 -
Cma05g00623 682 Pfam Exo70 exocyst complex subunit 290 645 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma05g00623 682 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 14 671 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00132 Cma-Chr5:585777 Cma05g00623 Cma-Chr5:3128909 2.04E-67 dispersed
Cma05g00623 Cma-Chr5:3128909 Cma17g00639 Cma-Chr17:5408234 0 dispersed
Cma12g00298 Cma-Chr12:1525123 Cma05g00623 Cma-Chr5:3128909 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00623 K07195 - csv:101207478 1253.43