Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00634 ATGGATTTTGTTCTTGCGAATTGCACGCATGCCGTTTCGTTTTCTGCTAAACAACGCACCTTGAAAGGTAGGAGTACGCTCGCGCGGGGAAGGAAGCAGAAGGTTTCTGTGATTAGGATTTCGAATTCTGCTACTGAAGTCTCCGGTAGTAGAGCTGCGGCGAGTGGAAGCAGTGATGGTTCTGGTGAGAGTAAGAAGTGGCAAGTGCCGAAATCTAGTACTGCCTTGGAGTTGCTGGATATTGAGCGCGGTGTTTGTATACCATTTCGCAAGTATTCTCCCGAGACAGTGAGAAACAAGGTATTGGAATCCAGAGGAGCAGTCTTATCTCTCATTTCTCGTGGTGTGGAGATAGTTTGGAGTCTCGGATTATACTGGTCTACATTGATGTATGACTGCTTTGTCGGAAGGGATGAAGAGGTCGTTCCATTTCGTGCTCAGCAGCTTAGAAATCTATTGTGTAATTTGGGACCTTCGTTCATTAAAGCTGGGCAGGTCCTTGCCAACAGACCCGATATTATTAGAGAAGATTATATGAATGAACTTTGCATTCTTCAAGATGATGTTCCTCCTTTTCCTAACGAGGTTGCGTTCAATATCATAGAAGAGGAACTGGGTCGCCCCCTTGAAGCTGTTTTTAGCAAAATTTCATCACGGACAATAGCAGCTGCAAGTTTGGGTCAAGTTTACCGAGCTACTCTACGAGACTCCGGTGAGGATGTTGCTATCAAGGTCCAAAGGCCTAAGATCGAGCCAATAATATACCAGGATCTTTTTCTCTTCCGAACGCTTGCTTCTTTTTTAAATGGCATCAGTCTACAAAAACTTGGGTGTAATGCTGAGCTCATAGTTGATGAATTTGGTGAGAAGCTACTGGAGGAGCTTGATTATACTTTGGAAGCCCGTAACCTTGAGGATTTTCTTGAAAACTTCAAAAATGATCCTACTGTAAAAATTCCTCGTGTTTACAAACAACTTTCTGGTTCACGAGTTTTGGTGATGGAGTGGATTGATGGTATACGCTGCACCGACCCACAGGCTATTAAGAATGCTGGCATTGATGTTGATGGATTTCTAACTGTTGGAGTTAGTGCAGCATTGCGGCAATTGCTAGAATTTGGGTTATTTCATGGTGATCCCCATCCTGGAAATATTTTTGCAATGCGTGATGGACGTATTGCATATGTTGATTTTGGAAACGTTGCTGTGCTCAGTCAGCTGAATAAACAGATCTTGATCGATGCAGTCGTGCATGCTGTAAATGAGGATTATGCTGAAATGGCTAATGACTTCACTAGGCTCGGGTTTCTGGCCCCTGGAACAGATGTTGCTCCTATCATTCCAGCATTAGAAGCTATTTGGCAAAATTCTGCTGGGAAAGGGTTATCTGATTTTAATTTTCGAAGTGTCACTGGAAAGTTCAATCAATTGGTCTATAATTATCCTATCCGAATACCTGAGAGATTCTCTCTTGTTATCCGATCTCTACTGACTCAAGAGGGAATTTGTTTTACTCTCAAACCCAACTTCAAGTTTCTTGAGGTTGCATATCCGTACGTCGCAAAGCGTCTTTTGACAGATCCAAACCCTGCCTTACGCGAACGACTCATCCAGGTTTTATTTAAAGATGGAATGTTTCAATGGAAGCGTCTCGAAAATCTTATAGTGCTTGCTAAAGAGAACGTCGTTAAGATGAGCAGCAACCCAGCATTGCAGAAGAACGACCTGCAAGGCTCAGGAAAAGTTGAGAAGAAACTTGACCTCAAAGATACAATCAAAGATGGGGCTCGCCTGTTCCTCCTAGACGCAGGAATCCGCCGACAGCTGCTTCTTGCTTTGACTGAAGACTCGCAGCTTCATGTTCAAGAGCTCGTAGATGTCTACCGATTACTTGAAGATCAGATTGACGTACCATCAATGGCTTTGGAAGTAGCCCGAGATTTTCCAAATGTAGTCCGGGATCTCATGCTTGCTTGGACCGAATCCGTTCTATCCGACAGATAA 2004 43.66 MDFVLANCTHAVSFSAKQRTLKGRSTLARGRKQKVSVIRISNSATEVSGSRAAASGSSDGSGESKKWQVPKSSTALELLDIERGVCIPFRKYSPETVRNKVLESRGAVLSLISRGVEIVWSLGLYWSTLMYDCFVGRDEEVVPFRAQQLRNLLCNLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGRPLEAVFSKISSRTIAAASLGQVYRATLRDSGEDVAIKVQRPKIEPIIYQDLFLFRTLASFLNGISLQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFLENFKNDPTVKIPRVYKQLSGSRVLVMEWIDGIRCTDPQAIKNAGIDVDGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQLNKQILIDAVVHAVNEDYAEMANDFTRLGFLAPGTDVAPIIPALEAIWQNSAGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPNFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGMFQWKRLENLIVLAKENVVKMSSNPALQKNDLQGSGKVEKKLDLKDTIKDGARLFLLDAGIRRQLLLALTEDSQLHVQELVDVYRLLEDQIDVPSMALEVARDFPNVVRDLMLAWTESVLSDR 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3181475 3186519 - CmaCh05G006340.1 Cma05g00634 294752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00634 667 ProSiteProfiles Protein kinase domain profile. 215 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00634 667 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 24 667 - -
Cma05g00634 667 PANTHER PROTEIN ACTIVITY OF BC1 COMPLEX KINASE 1, CHLOROPLASTIC 24 667 - -
Cma05g00634 667 MobiDBLite consensus disorder prediction 49 68 - -
Cma05g00634 667 Gene3D Transferase(Phosphotransferase) domain 1 213 413 - -
Cma05g00634 667 Pfam ABC1 atypical kinase-like domain 185 429 IPR004147 -
Cma05g00634 667 SUPERFAMILY Protein kinase-like (PK-like) 186 403 IPR011009 -
Cma05g00634 667 CDD ABC1_ADCK3-like 185 431 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00634 - - - csv:101205089 1223.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01055 Cma-Chr4:5454986 Cma05g00634 Cma-Chr5:3181475 4.34E-39 dispersed
Cma05g00634 Cma-Chr5:3181475 Cma11g01176 Cma-Chr11:6854193 5.13E-121 dispersed
Cma05g00634 Cma-Chr5:3181475 Cma07g00510 Cma-Chr7:2206266 1.65E-63 transposed
Cma05g00634 Cma-Chr5:3181475 Cma03g00776 Cma-Chr3:6032070 1.88E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g213 Blo01g01345 . Bda01g00706 . . . Bma04g00312 Bma01g02132 . . . Cma05g00634 . . Sed01g1309 . . Bhi04g01074 Tan02g2645 Cmetu03g0988 . Hepe10g0312 . Lcy13g1339 . . . . . . . Cone4ag1851 Cone7ag1756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01187 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007163 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00634 Cma_Chr05 FPKM 11.663217 11.225207 10.126319 8.445386 5.885978 4.231255 5.498483 8.975525 9.178535 10.524489