Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00642 ATGTCGACGGTCGAAAGCTTGCTCAATCCATCCGCCTCCAAGCTTTTTTCCTTCAAATCCTTGTTCAATCCTTCCATTTCCAGTTCCTCGATTTTCTCGCCCGCTCCGCGATTGCGCAGATTAAGTTCTTCGTCGTCGCTGTCGATTAGGTGCTCGGCAACTCAGCAAATGGAGGCTGTGGTTGATTCTGTAAGTCCAGGGCAATTCCGAGTTGATGTTCTCTCGGAATCACTGCCATTCATCCAGAAATTTCGAGGTAAAACGATTGTTGTGAAGTACGGAGGGGCCGCCATGAAATCGCGGTCGCTCCAGGCTTCGGTTGTTAACGATCTTGTTCTTCTGTCCTGCGTCGGCCTTCGTCCGATCTTGGTCCATGGCGGCGGGCCGGAAATCAACAACTGGCTCAAACGGCTCAACATTGAGGTCGTTTTCCGCGACGGTCTGCGGGTGACCGACGCCGAAACAATGAAAATAGTGTCGATGGTGTTGGTCGGCGACGTGAATAAGAATCTGGTTTCGTTGATCAATAAGGCCGGAGCATCGGCTGCAGGGCTCTGCGGTGTGGATGGGCGGCTACTTACGGCTCGTCCAGCCCCTAACGCGGCACAGTTAGGATTTGTAGGCGAGGTCGCACGTGTGGATCCTACGGTTCTACAGGCACTTCTGGACAAAGGCCACATTCCGGTGGTTTCTTCGGTGGCTGCCGATGAGTCGGGGCAGATGTACAATATCAACGCGGATACAGTTGCCGGAGAATTAGCGGCGGCGCTGGGGGCGGAGAAGCTGATCTTACTGACGGATGTGGCGGGGATTCTTGAAGACCGTGACGATCCGAAAAGTTTAGTGAAGCAGATAGACATCAAAGGGGTGAAGAAGATGATGGACGAGGGAAGAATCGGCGGAGGGATGATTCCAAAGGTGAGTTGTTGTGTCCGATCGTTGGCTCAAGGGGTGAGGACGGCGAGTATCATTGACGGGAGGCTGGAGCATTCGTTGCTGCTAGAGATCATGACTGACAATGGAGCCGGAACCATGATTATAGGCTAA 1047 53.2 MSTVESLLNPSASKLFSFKSLFNPSISSSSIFSPAPRLRRLSSSSSLSIRCSATQQMEAVVDSVSPGQFRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSRSLQASVVNDLVLLSCVGLRPILVHGGGPEINNWLKRLNIEVVFRDGLRVTDAETMKIVSMVLVGDVNKNLVSLINKAGASAAGLCGVDGRLLTARPAPNAAQLGFVGEVARVDPTVLQALLDKGHIPVVSSVAADESGQMYNINADTVAGELAAALGAEKLILLTDVAGILEDRDDPKSLVKQIDIKGVKKMMDEGRIGGGMIPKVSCCVRSLAQGVRTASIIDGRLEHSLLLEIMTDNGAGTMIIG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3245728 3246774 + CmaCh05G006420.1 Cma05g00642 294760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00642 348 Hamap Acetylglutamate kinase [argB]. 86 341 IPR037528 GO:0003991|GO:0006526
Cma05g00642 348 CDD AAK_NAGK-C 73 346 IPR041727 -
Cma05g00642 348 Pfam Amino acid kinase family 87 324 IPR001048 -
Cma05g00642 348 PRINTS Glutamate 5-kinase family signature 118 132 IPR001057 GO:0005524|GO:0016301
Cma05g00642 348 PRINTS Glutamate 5-kinase family signature 245 272 IPR001057 GO:0005524|GO:0016301
Cma05g00642 348 PRINTS Glutamate 5-kinase family signature 298 318 IPR001057 GO:0005524|GO:0016301
Cma05g00642 348 Gene3D - 64 348 IPR036393 -
Cma05g00642 348 PANTHER BNAC04G55460D PROTEIN 36 348 - -
Cma05g00642 348 SUPERFAMILY Carbamate kinase-like 70 347 IPR036393 -
Cma05g00642 348 TIGRFAM argB: acetylglutamate kinase 88 323 IPR004662 GO:0005737
Cma05g00642 348 PANTHER N-ACETYLGLUTAMATE SYNTHASE 36 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00642 K00930 argB; acetylglutamate kinase [EC:2.7.2.8] - csv:101203871 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00642 Cma-Chr5:3245728 Cma11g00588 Cma-Chr11:2818335 0 dispersed
Cma05g00642 Cma-Chr5:3245728 Cma03g00908 Cma-Chr3:6592295 8.48E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g258 . . . . . . . . Cmo05g00670 . . Cma05g00642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00587 Cpe11g00565 . . . . . . . . . . . . . . . Lsi08g01144 . Chy03g01175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009145 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00642 Cma_Chr05 FPKM 33.041546 33.71368 34.600845 28.031746 47.426926 45.271725 43.918659 28.70421 30.367786 28.325514