Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00643 ATGTGGAGGAAGAGAACAAGAGCTAGAGATTACGCGCTGAAGATGGCTGTCAAAACAGCACAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCGAGCACGGGAACAACTGGACCTAGTGCTGGTTCAAAGTCAGAAGAGCAGCGCTCTGCTGTTGCTCTTCAGTCTGAATTCAATAAGAGGGCTTCCAAGGTTGGATTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACCTTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAGTTTAAAGAAGTTCTAACCATGCGAACTGAAAATTTGAAGGTTCATGAGAATAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACCAATCCTTTTGTGCGCCAGCGTCCATTAGCTTCCAGGTCAGCTGCTGGTGCCTCAAGTGCGCCCCCTCCTCCATGGGCCAAGGCGTCCACATCTTTTTCTAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAACAGCAACAGCAGCAGATGGTTCCATTACAAGACACTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCCACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGATGAGAACATGGACGATACTCTGTCAAATGTGGAGGGGGCACAGGGTGCATTGCTCAAGTATCTAAACAGTATATCATCAAATAGGTGGCTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTCATGGTTTTCCTATTTTTTGTGGCATAG 1062 43.79 MWRKRTRARDYALKMAVKTAQSFRDRTLEFQNITERLKKSFSSSTGTTGPSAGSKSEEQRSAVALQSEFNKRASKVGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3249770 3258731 + CmaCh05G006430.1 Cma05g00643 294761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00643 353 MobiDBLite consensus disorder prediction 184 204 - -
Cma05g00643 353 SUPERFAMILY t-snare proteins 66 316 IPR010989 GO:0016020|GO:0016192
Cma05g00643 353 PANTHER SYNTAXIN-32-LIKE 21 352 - -
Cma05g00643 353 MobiDBLite consensus disorder prediction 182 257 - -
Cma05g00643 353 Pfam SNARE domain 297 349 IPR000727 -
Cma05g00643 353 Gene3D - 63 316 - -
Cma05g00643 353 CDD SNARE_syntaxin5 264 342 - -
Cma05g00643 353 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 20 39 IPR021538 -
Cma05g00643 353 SMART tSNARE_6 256 323 IPR000727 -
Cma05g00643 353 MobiDBLite consensus disorder prediction 39 63 - -
Cma05g00643 353 ProSitePatterns Syntaxin / epimorphin family signature. 267 306 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma05g00643 353 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 261 323 IPR000727 -
Cma05g00643 353 PANTHER SYNTAXIN 21 352 IPR045242 -
Cma05g00643 353 MobiDBLite consensus disorder prediction 221 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00161 Cma-Chr4:797518 Cma05g00643 Cma-Chr5:3249770 5.07E-84 dispersed
Cma04g01124 Cma-Chr4:5812955 Cma05g00643 Cma-Chr5:3249770 3.56E-92 dispersed
Cma05g00643 Cma-Chr5:3249770 Cma17g01060 Cma-Chr17:7591210 9.91E-07 dispersed
Cma12g00301 Cma-Chr12:1537773 Cma05g00643 Cma-Chr5:3249770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00643 K08490 - csv:101203633 520.39