Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00645 ATGTGCTGGAAGGTAAATTTCAACCATTCACTTCAATTCTTCGAACGCCGTCGTTTATGCACTCCTCTGATTGCCTCTCTGTCGTCTTCTCCGCCCGCTTCCATCGGCGGCGTTCGCTCAGTCCGATTGGAAGCTTTGCAGATTGACGGAGTTGTATCAAAGGGCTGCAGCAACATCAATTTAAGTTATCTATCAAAATTTGTTACTTTTCTCCATCTCTTTGTGGTGTCCGCCAAACTGGTTTTCTGCTTACGCCTTCGACTCGATCGATATATCACATTGATGGACGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTAATGGCACAACCAGAAAATTCTAACAGCAGTGAGCATATCATTGACGTAACTGGTACTGGTGATTCTACCCCCTCTAGTTTACCTCATGGTAGGAATTCGAATGGCTTAAATTTATCACAACCTGAAGATAGTCCTTCAAGTAGTACACAAGTTCCCTCATCTCAACCTTCAATTTCTTCTACTGAATCAAATTCTAGGAATTCTTCATTCATAAGAAGAGGAGATGCGCGACGGCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACCATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAACGAAAAACCTCGTGCACCTTTGTTTGCGTGGATTGTGGGATATGCATTTGGGTGTGGTGCCACCCTTCCTCTCCTCTATTGGCGTTATCGACACCACAATCAAGCTTCAGAACAAGGTTCTCTTCAGTCCAGCCAGAATTCTTCTCGCATTAATGCTCCTGCTGGGCCATTCTCTCTTTCTGTTTCTAGGGCGTCAGAAGGGGAAGAACTTCAGCATCCTGCCCCATCCCCTAGAGGCAGTCAAGGGTCAGGAGTAGTAACAGGAAGATTTAAAATGTTGGTCGAATATTTGAAGATGGGTCTGGATTGCTTCTTTGCTGTTTGGTTTGTAGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCGGAGGCTCCTAACTTGTACAGGCTATGCATAGTGTTTCTTACCTTTAGCTGTATTGGTTACGCCATGCCTTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCATGTATAATTTCCATCCTTGGGTTTAGAGAGGAGTTGACACAGACCCGAGGAGCCACAGCAGAATCTATTAATGCTTTACCAGCTTATAAATTTAAGCTGAAGAAAAGTAGAAGCGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGAAGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAGCGAGTGATCTCTGGAGAAGATGCTGTCTGTTGCATTTGCTTAGCAAAATACGCCAACAATGATGAACTGAGAGAGTTGCCATGTTCTCACTTTTTTCACAAGGACTGTGTAGATAAATGGTTGAAAATCAACGCACTGTGCCCACTGTGCAAAACCGAGGTCGGTGAGAGTATCATCAGCTCTCTTGATGGGGCTAATAGACAACAGGCCGGTCAACCTTATTTTTCGGTTCTTATGCGGCATTCATTAGAGCCTTCGACAACCTCTTGTAGCAAATCCATCCATTGTCAATATCGGCAGATGGTGCATGCTCGACATTTTGAACGAGTGGAGATCGTTGTGACTGCCCGTGTATATACAAGGAAAACATTCAACAAAAGTCGATTGTGA 1731 43.96 MCWKVNFNHSLQFFERRRLCTPLIASLSSSPPASIGGVRSVRLEALQIDGVVSKGCSNINLSYLSKFVTFLHLFVVSAKLVFCLRLRLDRYITLMDVPSVELNCESEGDSYPLLMAQPENSNSSEHIIDVTGTGDSTPSSLPHGRNSNGLNLSQPEDSPSSSTQVPSSQPSISSTESNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYAFGCGATLPLLYWRYRHHNQASEQGSLQSSQNSSRINAPAGPFSLSVSRASEGEELQHPAPSPRGSQGSGVVTGRFKMLVEYLKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREELTQTRGATAESINALPAYKFKLKKSRSGDDRENNSGAGEGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCSHFFHKDCVDKWLKINALCPLCKTEVGESIISSLDGANRQQAGQPYFSVLMRHSLEPSTTSCSKSIHCQYRQMVHARHFERVEIVVTARVYTRKTFNKSRL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3264376 3271297 - CmaCh05G006450.1 Cma05g00645 294763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00645 576 MobiDBLite consensus disorder prediction 124 184 - -
Cma05g00645 576 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 95 517 - -
Cma05g00645 576 Pfam Ring finger domain 457 498 IPR001841 -
Cma05g00645 576 ProSiteProfiles Zinc finger RING-type profile. 457 498 IPR001841 -
Cma05g00645 576 SMART ring_2 457 497 IPR001841 -
Cma05g00645 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 505 IPR013083 -
Cma05g00645 576 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 95 517 - -
Cma05g00645 576 SMART ringv_2 456 498 IPR011016 GO:0008270
Cma05g00645 576 SUPERFAMILY RING/U-box 449 503 - -
Cma05g00645 576 MobiDBLite consensus disorder prediction 124 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00645 Cma-Chr5:3264376 Cma09g01026 Cma-Chr9:5270586 1.96E-52 dispersed
Cma12g00304 Cma-Chr12:1550578 Cma05g00645 Cma-Chr5:3264376 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00645 - - csv:101211818 746.888