Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00646 ATGCTCAAGCAGATCTTCAGCAAGCTTCCTCGAAAGTCATCTGACTCGTCAGATTCACCAAAAACGCCTCGGTCATCGTCGAATCGTTCAAGTCCGAGAAGTAGCTCTACATCCTCCGCCCATGGGACTCCGAAATCAAGCAGTGGCGCTTCTGCCTCTGGCCGGTCCAATGCTACCAAGAAAACTTCTTCTGCAGTCTTCCCTGCGAGCCTCGTGGCTGGAATCGAGCCGCTGGTGCCTTTCAATGACGTGCCCTCGTCTGAGAAGATGAACCTCTTTGTGAGTAAACTGAGTCTTTGCTGTGTTACCTTTGATTTTACCGATCCCAGTAAGAATTCCATTGAAAAGGGTGTTAAAAGGCAAACGTTGGTTGAATTAGTGGATTTTGTTGGAGCTGGAACTATGAAATTCAACGAACCTGCGATTCATGCATTGTGTAAAATGTGTTCTGCTAATCTGTTTAGAGTTTTCCCACCGAACTATCGGTCTAACATGATTGGCGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTGAAAATGATGATGATGAGCCCACATTTGATCCTGCTTGGCCTCATTTGCAGCTAGTTTATGATTTGCTACTTAAGTTCATACATTCTTCAGGTGTTGATGCTAAGATTGCAAAGAAGTATATGGATCATTCGTTTATCTTGAAACTGTTGGAGTTGTTTGATTCAGAGGATCCCAGAGAAAGGGAATGTTTAAAAACAATTCTCCATAGAATCTACGGGAAGTTCATGGTTCATCGGCCTTTCATACGAAAGTCGATCAACAATATATTTTATCGATTCGTAACCGAGACCGAACGACATAATGGCATTGCTGAGTTGCTGGAGATCTTTGGGAGTATAATCAGCGGGTTTGCTTTACCTCTTAAAGAGGAACACAAAATCTTCTTGTGGAGGGTTTTGATTCCTCTGCATAAGCCAAAATCTGTAGGCGCCTACTTTCAACAACTTTCATACTGCATTATGCAGTTCGTGGAGAAGGAACCGAAGCTAGCGAGCGTCGTGGTTAAAGGACTGTTGAAGTATTGGCCGCTTACGAATAGTCAGAAAGAGGTGATGTTTCTGGGTGAGTTAGAGGAGATTTTGGAAGCAGTTAACATGTTGGAATTCCAGAAAGTCATGGTTCCTTTGTTCTGGCGCATAGGATGCTGCATTAACAGTGCCCACTTTCAGGTAGCTGAAAGGGCCCTTTTCTTATGGAACAACGACCACATCGTGAACTTGATTGCACACAACCGACACGTGATACTGCCCATCATACTTCCCACCTTAGAGAGGAACGCACAGAGCCATTGGAATCCAGCAGTGGTGAACCTGACCCTTAACGTTAGAAAGATATTCATGGAGATGGATGATGAGCTATTCATATCCTGCCATGCACACTTCAAGGAGGAAGAAGCAAAAGTAACCGTTACAGCGACGAAACGAAAGCAGATATGGGAGCGACTCGAGGATGCAGCAGCCAATGTCCAACCGATGGCTGGGAGAACTGCCGTGCTGGTAACTCCTTTAACATCCTCAATAGCCTGCTGA 1560 45.71 MLKQIFSKLPRKSSDSSDSPKTPRSSSNRSSPRSSSTSSAHGTPKSSSGASASGRSNATKKTSSAVFPASLVAGIEPLVPFNDVPSSEKMNLFVSKLSLCCVTFDFTDPSKNSIEKGVKRQTLVELVDFVGAGTMKFNEPAIHALCKMCSANLFRVFPPNYRSNMIGGGGGGGGGGGENDDDEPTFDPAWPHLQLVYDLLLKFIHSSGVDAKIAKKYMDHSFILKLLELFDSEDPRERECLKTILHRIYGKFMVHRPFIRKSINNIFYRFVTETERHNGIAELLEIFGSIISGFALPLKEEHKIFLWRVLIPLHKPKSVGAYFQQLSYCIMQFVEKEPKLASVVVKGLLKYWPLTNSQKEVMFLGELEEILEAVNMLEFQKVMVPLFWRIGCCINSAHFQVAERALFLWNNDHIVNLIAHNRHVILPIILPTLERNAQSHWNPAVVNLTLNVRKIFMEMDDELFISCHAHFKEEEAKVTVTATKRKQIWERLEDAAANVQPMAGRTAVLVTPLTSSIAC 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3272232 3274696 + CmaCh05G006460.1 Cma05g00646 294764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00646 519 PIRSF PP2A_B56 3 516 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cma05g00646 519 MobiDBLite consensus disorder prediction 19 59 - -
Cma05g00646 519 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 510 - -
Cma05g00646 519 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 510 IPR002554 GO:0000159|GO:0007165|GO:0019888
Cma05g00646 519 SUPERFAMILY ARM repeat 91 491 IPR016024 -
Cma05g00646 519 Gene3D - 85 495 IPR011989 -
Cma05g00646 519 MobiDBLite consensus disorder prediction 1 59 - -
Cma05g00646 519 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 80 496 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00646 K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' - csv:101203139 905.205
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00646 Cma12g01232 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00646 Cma-Chr5:3272232 Cma12g01232 Cma-Chr12:9642877 0 dispersed
Cma12g00305 Cma-Chr12:1556516 Cma05g00646 Cma-Chr5:3272232 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g369 . . . . . . . . Cmo05g00676 . . Cma05g00646 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00570 . . . . . . . . . . . . . . . . . . .
Vvi11g397 . . Bda01g01871 . . . . . . . Cma05g00646 Cma12g01232 Car05g00593 Car12g01204 . . . . . . . . . . Cla11g00243 . Cec11g0275 Cco11g0284 Clacu11g0405 Cmu11g0254 Cre11g0752 Cone2ag0277 Cone16ag0761 . . . Csa02g00151 Chy05g01348 . . . . . . . Bma01g00414 Bma06g01050 . Cmo05g00676 Cmo12g01260 . . . . Cpe11g01097 Cpe07g00992 . . . . . . . . . . . . . . Lsi11g00283 . . Cme05g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004717 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 3 1 1 1 1 1 1 1 1 2 1 0 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00646 Cma_Chr05 FPKM 10.558837 11.837235 14.724505 14.49329 29.362669 31.088842 31.352158 19.736176 19.586544 20.377922