Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00647 ATGGCTCACCACACTATGCTAACCAATGTTTCTAAAAATTCCACTCACCCACATCCACAATTACCTCCCAATCCCATCTTTCATGATTTTTTAGGCATGAAAAACCCTGATTCTCATCTGGGTTTCTCTCCCCGGAAGGCGTCGCAGCCGGATTTGCGGCCGTCCGAACACTGTCCCGCTGCCTCTGCTTCCCGTGGCTCCTCTTCAAGCGGCGGCCGTGGCCTCATCTCTACTACCTCAGATCTTGCTTCTGATCGGCAGGTAGGTAATCATCTTGAAGGCGTTCCGTTTTACGGTCCGAGGGGCGATATCTCAACTACGGAGATCCATAGTAGGATTATAGGGAGTAAGAGAAGCATATCAGATTCTGGTTTTATGTCGTCGTATCGAGATGGTGTTCCACATATGCCTTCTGAGTCGCATCATAATAGCTTGCATCTAATGAAGACGTTACGAAATGGAGCAGGCGGGGATCGAAATCAAAGATCAAATGACGATGAAGTGATGCAGCATCCAATGAGGCCGAACGCAGCGTCGCTTATCTTGCAATCTCATGTTGGAAGTGGCAGTAGACTTGATGCTGATGTTACCAAGTGGGAGAGATCCACGCTTATGAACATCGGTCCTGCTCCGACCGTGCAGTGCTCTCCTCGTGGGACGTTTGTGCCTTTTCCCCCTCAGTTACCTACAAATCGATATAGAGAAGCCAACGTTATTCCTCTGAATATATCTCAATCAGCTGCTGATGAGGGATCTCGTACTGGAATCAAAGGTCCTGGAATCTTGAGTTCGAGTAATCCTGGTGGTGGAACCTCTGAACGAAACTCGTCGATCCTGCTCAAAAAGTCCGGGACTAATATCGTAGATCCCGAATCCTGTGTTCCTTCAAGTCGACGTGGTCTTACATCGGTTAATCGGCAGATGACGATATTTTACGGTGGTCAAGCTCATGTCTTCGACGACGTTCATCCAAACAAGGCAGATGTTATAATGGCCTTAGCTGGATCGAACGGCGGATCGTGGTCGACTAACTATGCAACAAAGTCAACAGCTAGGCCAATCAACGAAAACCAAATGCCAAGTGGAGAACTCGATATCGTCGCCAAAGAAGCACATGGAAAGCTGTGTGTTGCTGGGAGTTCCATGCCTCTAGTTGGCTCTGTTGAGAAAATCTCAACATCAGCAGGACCTCCTCATGGTAGCAGTGCTGGTAAAGGTGGTAGAGACCAATCTCAAGCCACCGATTCGAGCATATAG 1257 48.37 MAHHTMLTNVSKNSTHPHPQLPPNPIFHDFLGMKNPDSHLGFSPRKASQPDLRPSEHCPAASASRGSSSSGGRGLISTTSDLASDRQVGNHLEGVPFYGPRGDISTTEIHSRIIGSKRSISDSGFMSSYRDGVPHMPSESHHNSLHLMKTLRNGAGGDRNQRSNDDEVMQHPMRPNAASLILQSHVGSGSRLDADVTKWERSTLMNIGPAPTVQCSPRGTFVPFPPQLPTNRYREANVIPLNISQSAADEGSRTGIKGPGILSSSNPGGGTSERNSSILLKKSGTNIVDPESCVPSSRRGLTSVNRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTNYATKSTARPINENQMPSGELDIVAKEAHGKLCVAGSSMPLVGSVEKISTSAGPPHGSSAGKGGRDQSQATDSSI 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3283185 3286918 + CmaCh05G006470.1 Cma05g00647 294765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00647 418 MobiDBLite consensus disorder prediction 1 88 - -
Cma05g00647 418 Pfam tify domain 306 335 IPR010399 -
Cma05g00647 418 MobiDBLite consensus disorder prediction 258 276 - -
Cma05g00647 418 MobiDBLite consensus disorder prediction 61 86 - -
Cma05g00647 418 MobiDBLite consensus disorder prediction 244 276 - -
Cma05g00647 418 MobiDBLite consensus disorder prediction 394 418 - -
Cma05g00647 418 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 67 417 IPR040390 -
Cma05g00647 418 MobiDBLite consensus disorder prediction 1 17 - -
Cma05g00647 418 PANTHER PROTEIN TIFY 8 67 417 - -
Cma05g00647 418 MobiDBLite consensus disorder prediction 388 418 - -
Cma05g00647 418 ProSiteProfiles Tify domain profile. 301 336 IPR010399 -
Cma05g00647 418 SMART tify_2 301 336 IPR010399 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00647 - - - bhj:120075721 668.307
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00647 Cma09g00475 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00647 Cma-Chr5:3283185 Cma09g00475 Cma-Chr9:2112383 8.30E-73 dispersed
Cma01g01523 Cma-Chr1:10659265 Cma05g00647 Cma-Chr5:3283185 4.71E-76 wgd
Cma12g00309 Cma-Chr12:1577770 Cma05g00647 Cma-Chr5:3283185 5.30E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g432 . . . . . . . . Cmo05g00678 . . Cma05g00647 Car09g00417 . . . Cpe06g00353 . . . . . . . Cla05g01757 Cam05g1871 Cec05g1884 Cco05g1947 Clacu05g1863 Cmu05g1744 Cre05g1874 . . . . . Csa03g04357 . . . . . . . . . . . . Cmo09g00481 Cma09g00475 . . . Cpe11g00571 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001357 2 5 2 1 0 2 5 2 2 2 2 2 4 2 2 5 2 2 4 2 2 1 2 2 2 2 1 7 3 1 73
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35073 PF06200 tify 3.40E-14 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00647 Cma_Chr05 FPKM 26.193945 28.407354 15.25913 15.721709 27.105812 31.60673 26.183487 22.108711 23.741705 21.766008