Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00654 | ATGTTACTAACCGTTGCATTGGATGCCTGTGCGCTATCTTGCTGCTCACGAGTTCTAAATTTTAATTACAGGCAAGTGTTACATGGTACAGCTGGGGGAATGTCTCCTCAAGTTCAATCGAGGAGCCAACAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGAGGGATCACTGATGGGTATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGACTCGAGCAGCTACGTTCTGGGATCCTTCAGCAACCGAAACCTTTCATACAGGCTCCTCAACCTTTTCCTCAGCTTCAGATGTTGACACCGCAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACGTCACCTTCTGTTAACGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGACGAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCCTGCCCCGTGGAGACAACAATGACATGATGATTAAGATTAAAATGGCTCAATTGCAGCAGCAACAACAGCAGCAACAGAATAGCAGCCAACAACAACTACAGCATTCTCTTTCAAATCAACAATCACAAAGCTCAAACCACAATATGCACCAGCAAGAAAAAATCGGGGGTGCTGGCAGTGTCACCATGGATGGTGGCATGACAAACTCATTTCGTGGAAATGATCAGGTTTCAAAAAATCAGCCTGGGAGAAAAAGGAAGCAGCCATTGTCGTCTTCAGGTCCAGCAAATAGCTCAGGAACAGCGAATACAGCGGGTCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGCAGCGACGGCACTGGCACTTTTACATCCCCCTCGAATCAGTTGTGGGATGATAAAGAAATTGAATTGCAGGCTGATATGGAACGCTTTGTGGAGGATGGGTCTCTTGATGACAATGTCGACTCTTTTTTATCCCATGATGATACGGACCCTCGAGATCCTGTAGGGCGCTGTATGGATGGTGGAAAAGGTGCCGTAAATGCTATACCTTGCTTTCTTCTTATTCTTCTGCTTGTTTCTTTGCAATTGCCAGTCAGATTCACATTTACGGAGGTGAATTCTGTTCGAGCAAGCACGAGCAAAGTTTCCGCTTGCCACTTTTCATCGGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGGCCGTGTTGTGGTACACAGAAAATTTAAAACCGAAAACTTCACTTGAAGAACATCTTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGTCTCGCAACATCATCGTTTGATCGAACGGTCAGGGTTTGGGATGCCGACAATCAATGTTATTCCCTACGTACTTTTACTGGACATTCTGCATCTGTTATGTCTTTGGACTTCCATCCAAAGAAGGACGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATTACTAATGGCAGCTGTGCAGCAGTATTCAAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTTGGGAGATACTTCGCTGCTGCTGTAGATAACATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGGGACACACCAAAACGGTTAATTCTCTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTTAGCGAGGATTCCGTTCGAGTATGGACACTTGCTTCGGGCAACGAGGGCGAATCCATTCACGACTTGAGCTGTAGCGGCAATAAGTTCCACTCGTGCGTTTTTCATCCCATCCAATCTAGTTTACTGTCATTAGAGCTTTGGAACACGACCGAGAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTTGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGCCACATTGTCCTTTGCCATTCGATCAGTTTCGACGGCGTTCGGAAATCCGTGATTTCTTCATCCGAGGAGCTGGCTTCCGGCATTCCCTGCTGCATCGAATCAGGTCGTATTTTCCTTCGTCCGGGTGCTTTCCATCCGCATCAGTGGTCCGTGTAATGTCTGAGGCGATCAAGAGCCAGGGTACTTGCAGTGAGCGCTTGATTGAGGAAAACAAATGTTTACAATCCCTTCAGGTGGATTCCGACAATGGAGTTTCAATGGATATACTAAAGGAGGACGTGGATGAACTGAACCAGAAGAAAGTTGCAGTGGGGAAGGACTTGCAATTTTTACAAGATAGAGTCAGTAAGGCGAATGCTAATCATGTGGTGCAGAATTTGATGTCATGCTTGAAGACTTTGGAGGATCTTGGAAAGCAGGAATCTGAACTCCTATCTCCATGTGATGCCCAGCGTATTAAATTGCAAGCTGAGATTTTCGAGCTGGAGGGAAGATTAACTGGAGACCACGAATGCTCAAATTTCTTGGATAGCTTAGATAATTTTATCAGTGAATCTGAGGAGGAATTGAATTCTGTAAAGAAGGCACTTGCTTCAAGATTAAGGGAAACACTTGCATTAAAGTGGCTTCTTGACGATGTGCCAACCCAAACTGAACTCATCCAGTACGAGCGCCGATTTTCAGAGCTATACATTAACATCCAGGATAAACTTAGGCAAACACGCAGATACTATGCAACCTACAATGCACTCTTGGAGATAAAGGATCTGATGTTGAAGGAGATATCCTTGTTGAATTCCATAAGTTCACAGGCTAATGTGTCAGTTTATACTCAATTGTGGCCCTGTGAGTTTCAAGATGCCATAGCCAACTCCATGAGTCAAATGAAACTTATCGAATCCATGGAGGGAATTCTGAAAGGCATTCAACAGAAACTAGATAAGGTGCTTCTTTCTCATCAAGAAGAGCAGCAGGTCTGCAATGCCTTGAAAGAGAAATATGCTGCAGCAACTGCAGAGCAAAGACGTTGCTATGCACTCTTAAAAGCTTTCCAGAGTTCATTAGAGGACTTCAAAATAGTGTTGATCAACTTAAAACGTGTTGCCCTGCCCCGTTCCAACTTCAAAGCCGGTATGTGA | 3225 | 44.99 | MLLTVALDACALSCCSRVLNFNYRQVLHGTAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAEGSLMGIPGSNHGGNNLTLKGWPLTGLEQLRSGILQQPKPFIQAPQPFPQLQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMTKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDNNDMMIKIKMAQLQQQQQQQQNSSQQQLQHSLSNQQSQSSNHNMHQQEKIGGAGSVTMDGGMTNSFRGNDQVSKNQPGRKRKQPLSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKEIELQADMERFVEDGSLDDNVDSFLSHDDTDPRDPVGRCMDGGKGAVNAIPCFLLILLLVSLQLPVRFTFTEVNSVRASTSKVSACHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHLSMITDVRFSPSMPRLATSSFDRTVRVWDADNQCYSLRTFTGHSASVMSLDFHPKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSFQGHTKTVNSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHDLSCSGNKFHSCVFHPIQSSLLSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIKLWKPHCPLPFDQFRRRSEIRDFFIRGAGFRHSLLHRIRSYFPSSGCFPSASVVRVMSEAIKSQGTCSERLIEENKCLQSLQVDSDNGVSMDILKEDVDELNQKKVAVGKDLQFLQDRVSKANANHVVQNLMSCLKTLEDLGKQESELLSPCDAQRIKLQAEIFELEGRLTGDHECSNFLDSLDNFISESEEELNSVKKALASRLRETLALKWLLDDVPTQTELIQYERRFSELYINIQDKLRQTRRYYATYNALLEIKDLMLKEISLLNSISSQANVSVYTQLWPCEFQDAIANSMSQMKLIESMEGILKGIQQKLDKVLLSHQEEQQVCNALKEKYAAATAEQRRCYALLKAFQSSLEDFKIVLINLKRVALPRSNFKAGM | 1074 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3329369 | 3340842 | - | CmaCh05G006540.1 | Cma05g00654 | 294772 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 663 | 695 | - | - | |
| Cma05g00654 | 1074 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 478 | 492 | IPR019775 | - | |
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 663 | 695 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | MobiDBLite | consensus disorder prediction | 192 | 234 | - | - | |
| Cma05g00654 | 1074 | MobiDBLite | consensus disorder prediction | 154 | 322 | - | - | |
| Cma05g00654 | 1074 | PANTHER | TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN | 408 | 695 | - | - | |
| Cma05g00654 | 1074 | CDD | WD40 | 413 | 695 | - | - | |
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 417 | 458 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | Pfam | WD domain, G-beta repeat | 662 | 695 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | Pfam | WD domain, G-beta repeat | 499 | 535 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | Pfam | WD domain, G-beta repeat | 581 | 614 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | Pfam | WD domain, G-beta repeat | 418 | 448 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | Pfam | WD domain, G-beta repeat | 455 | 491 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | MobiDBLite | consensus disorder prediction | 242 | 301 | - | - | |
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 459 | 494 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | Coils | Coil | 789 | 809 | - | - | |
| Cma05g00654 | 1074 | MobiDBLite | consensus disorder prediction | 32 | 53 | - | - | |
| Cma05g00654 | 1074 | Coils | Coil | 1015 | 1035 | - | - | |
| Cma05g00654 | 1074 | PANTHER | TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN | 24 | 387 | - | - | |
| Cma05g00654 | 1074 | SMART | WD40_4 | 656 | 695 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | SMART | WD40_4 | 410 | 449 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | SMART | WD40_4 | 495 | 535 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | SMART | WD40_4 | 538 | 574 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | SMART | WD40_4 | 577 | 615 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | SMART | WD40_4 | 452 | 491 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | SUPERFAMILY | WD40 repeat-like | 409 | 695 | IPR036322 | GO:0005515 | |
| Cma05g00654 | 1074 | PANTHER | TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 | 24 | 387 | IPR044716 | GO:0003714 | |
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 502 | 544 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 502 | 540 | - | - | |
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 459 | 494 | - | - | |
| Cma05g00654 | 1074 | Gene3D | - | 553 | 711 | IPR015943 | GO:0005515 | |
| Cma05g00654 | 1074 | Gene3D | - | 406 | 552 | IPR015943 | GO:0005515 | |
| Cma05g00654 | 1074 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 584 | 624 | IPR001680 | GO:0005515 | |
| Cma05g00654 | 1074 | PANTHER | TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 | 408 | 695 | IPR044716 | GO:0003714 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00654 | - | - | - | cpep:111805531 | 1191.79 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma05g00654 | Cma10g00591 | CCT | |
| Cma05g00654 | Cma10g00591 | ECH |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00654 | Cma-Chr5:3329369 | Cma14g01888 | Cma-Chr14:13360311 | 1.47E-138 | dispersed | |
| Cma12g00312 | Cma-Chr12:1589981 | Cma05g00654 | Cma-Chr5:3329369 | 0 | transposed | |
| Cma12g00311 | Cma-Chr12:1585771 | Cma05g00654 | Cma-Chr5:3329369 | 1.60E-34 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi4g426 | . | . | . | . | . | . | . | . | Cmo05g00686 | . | . | Cma05g00654 | . | . | Sed01g1339 | Cpe07g00273 | . | Bhi04g01022 | Tan02g2682 | Cmetu03g2197 | . | Hepe10g0285 | . | Lcy13g1301 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Car05g00598 | Cpe11g00581 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | |
| Vvi11g402 | . | . | . | . | Bpe01g00505 | . | . | . | . | . | Cma05g00654 | . | Car05g00598 | . | Sed08g0737 | . | Cpe18g00457 | Bhi02g01088 | Tan09g1333 | Cmetu05g0271 | . | . | . | . | . | . | . | . | . | . | . | Cone2ag0275 | Cone16ag0764 | . | . | . | . | . | Cme02g01301 | . | Blo14g00816 | . | . | . | . | . | . | . | Cmo05g00686 | . | Cma10g00591 | . | Car10g00546 | . | . | . | . | . | . | . | . | . | . | Cla06g01040 | Cam06g1163 | Cec06g1202 | Cco06g1207 | Clacu06g1122 | Cmu06g1095 | Cre06g1902 | . | Csa01g02090 | Chy02g01938 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009179 | 1 | 7 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 2 | 0 | 0 | 2 | 1 | 1 | 2 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 33 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cma05g00654 | Cma_Chr05 | FPKM | 14.11876 | 14.760147 | 18.709209 | 18.08674 | 23.225611 | 25.563772 | 23.270794 | 21.337759 | 18.634426 | 17.862394 |