Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00655 ATGGGTTCTTGCAAACACCAAGAACACGATCAACCACAAGAACCCAAATGCCTATGGATCCATGGCCCCATAATTGTCGGCGCCGGCCCATCAGGATTAGCCGCCGCCGCTTCCCTTTCCCACAATCGAATCCCTTCGCTCATTCTCGAGAAATCCGATTGCATTGCTTCCCTTTGGCACTACCGCACCTACGATCGACTTAAACTCCATCTCCCCAAGCATTTTTGCGAGCTTCCTCTCATGGGTTTCCCTCAAAACTTCCCAAAATACCCTTCCAAAGATCAGTTCATTTCATACATGGAGTCCTACGCTTCCCATTTCTCCATTCAACCCCGGTTCAATCAGACCGTTCTCGCCGCTGAATTCGACTCTGTTTCCCGGTTTTGGAGAGTCTCCACTCAAGATACCCTGTACATTTCGCGCTGGCTCATCGTCGCAACCGGAGAAAATGCAGAGCCGGTTATTCCTGAGATTCTGGGGATTGAGCGGTTTACTCGAACCGTGGTTCATACTAGTATGTATAAGTCCGGTTCGGAATTTAAAAACCAGAGGGTTTTGGTCGTTGGTTGTGGGAATTCCGGTATGGAAGTTAGTTTGGATCTCTGCAGACAAAATGCCATCCCCCATATGGTTGTTAGAAACACGGTTCATGTATTACCGCAAGAAATGTTCGGATTCTCGACATTTGGAATAGCGATGGAGTTTATGAAATGGCTACCTCTAAAATTGGTGGATAAGATTCTTCTTTTAGCCGCCAATTTGACATTAGGCAATACCAATCAATTGGGTCTCCGACGACCGAAAACCGGTCCGATCGAGCTCAAAAATGCTACGGGAAAGACCCCGGTTCTCGACGTCGGAGCCTTGTCGTATATAAGATCAGGGAAGATCAAGATAATGGAAGGGATTAAGGAAATAACAAGAAATGGAGCGAAGTTCATGGATGGACAAGAGAAGGAGTTTGATTCGATAATCTTAGCGACCGGGTACCGAAGCAATGTGCCAAGTTGGCTCAAGCATGGATGTGATTTTTTCACGAAAGACGGGATGCCGAAAACCCCGTTTCCGAACGGGTGGAAAGGCGAGAGGGGGTTATACACGGTCGGGTTTACTAAGAGAGGGCTGCTCGGAACCACGTCGGATGCCATGAAAATTGCCGACGACATTGCCGAGCAATGGCAGGCGGGGTGGAATGAGGATGACAAGAATAAATCTTCGTTAGATGTTTATATTCACGATTATTTGGTAAAAAGAGATATGAAGGCTACTGCTCAGGCTTTCCAAGCAGAGGGAAAAGTGTCTTCGGAGCCTGTGGCGATCGATGCGCCTGGAGGCTTTCTTTTCGAATGGTGGTCGGTTTTCTGGGATATATTCATTGCTAGAACCAATGAGAAACACTCTGATGTTGCTGCATCTTATATTGAGGTTTGTTATAAGATTGCTGTTTAA 1449 46.86 MGSCKHQEHDQPQEPKCLWIHGPIIVGAGPSGLAAAASLSHNRIPSLILEKSDCIASLWHYRTYDRLKLHLPKHFCELPLMGFPQNFPKYPSKDQFISYMESYASHFSIQPRFNQTVLAAEFDSVSRFWRVSTQDTLYISRWLIVATGENAEPVIPEILGIERFTRTVVHTSMYKSGSEFKNQRVLVVGCGNSGMEVSLDLCRQNAIPHMVVRNTVHVLPQEMFGFSTFGIAMEFMKWLPLKLVDKILLLAANLTLGNTNQLGLRRPKTGPIELKNATGKTPVLDVGALSYIRSGKIKIMEGIKEITRNGAKFMDGQEKEFDSIILATGYRSNVPSWLKHGCDFFTKDGMPKTPFPNGWKGERGLYTVGFTKRGLLGTTSDAMKIADDIAEQWQAGWNEDDKNKSSLDVYIHDYLVKRDMKATAQAFQAEGKVSSEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIEVCYKIAV 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3341907 3348936 - CmaCh05G006550.1 Cma05g00655 294773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00655 482 SMART Lish 403 435 IPR006594 GO:0005515
Cma05g00655 482 Gene3D - 23 396 IPR036188 -
Cma05g00655 482 Pfam LisH 407 431 IPR006594 GO:0005515
Cma05g00655 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 184 202 - -
Cma05g00655 482 PRINTS FAD-dependent pyridine nucleotide reductase signature 23 42 - -
Cma05g00655 482 SUPERFAMILY FAD/NAD(P)-binding domain 24 214 IPR036188 -
Cma05g00655 482 ProSiteProfiles LIS1 homology (LisH) motif profile. 403 435 IPR006594 GO:0005515
Cma05g00655 482 SUPERFAMILY FAD/NAD(P)-binding domain 181 385 IPR036188 -
Cma05g00655 482 Pfam Pyridine nucleotide-disulphide oxidoreductase 24 215 - -
Cma05g00655 482 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA1-RELATED 13 411 - -
Cma05g00655 482 PRINTS Pyridine nucleotide disulphide reductase class-II signature 180 204 - -
Cma05g00655 482 PRINTS Pyridine nucleotide disulphide reductase class-II signature 141 149 - -
Cma05g00655 482 PRINTS Pyridine nucleotide disulphide reductase class-II signature 22 44 - -
Cma05g00655 482 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 13 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00655 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221527 704.131
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00655 Cma12g00313 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00655 Cma-Chr5:3341907 Cma06g01281 Cma-Chr6:8507093 2.35E-176 dispersed
Cma14g01888 Cma-Chr14:13360311 Cma05g00655 Cma-Chr5:3341907 2.49E-30 dispersed
Cma12g00313 Cma-Chr12:1602036 Cma05g00655 Cma-Chr5:3341907 0 wgd
Cma12g00265 Cma-Chr12:1361349 Cma05g00655 Cma-Chr5:3341907 1.04E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g423 . . . . Bpe02g01231 . . . Cmo05g00687 Cmo12g00265 . Cma05g00655 . Car12g00294 . . . . . . . . . . . . . . . . . . . . . . . . Cme03g01659 . . . . . . . . . . . . Cma12g00313 . . Cpe11g00582 . . . . . . . . . . . . . . . Lsi08g01158 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007846 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35074 PF13738 Pyr_redox_3 2.80E-29 CL0063 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00655 Cma_Chr05 FPKM 2.028986 2.751806 2.761907 2.84164 3.365566 2.032606 3.598455 2.213062 2.004686 2.454904