Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00661 ATGGGTTTGGTTGAAGAATACTTGCCAGCAATGGCCATGTTTGGGCTTCAAGTCACTTATGCCATTATGGCTCTCCTCTCCCGAGCTGCCCTCTTGAAGGGCATGAGTCCTAGAGTGTTCGTTGTTTATAGGCAGGCCATTGCCACTCTTTTTATTGCTCCCATCGCTTATTTCTCAAGGTCGAAATCAAGGAGGTTGTCTTTGGATTTGAAGAGCTTTTCTCTAATTTTTCTAGCTGCTCTTGTCGGGGCAACCATGAATCAAAATGTTTACTTTGAGGGAGTTTTCTTGGCTGGCTCGTCAATGGCGACGGCGATGACGAATTTGATACCGGCAGTGACATTTGTGATAGCGACGATGGTTGGGATGGAGAGTTTGAAGATGAGAAGCTTAAGGAGCATGGCAAAGATGGGAGGGACAGTGATTTGTGTGAGTGGGGCTATGTGCATGGCTCTTCTTAGGGGTCCAAAGCTTCTCAATTCATCATTAGGGTTTGGGATGAAATCTTCTATATTTAGTGTGGAAAGTGGAAGTCCCCATGCTTGGCTATTGGGTTCCTTGTGTGTCTTTGGGAGCTGTTGTTGCTGGTCAATTTGGCTAATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCATTATCAGCTTGGATGTGTTTGTTTGCCACGATTCAGTCGATGATTGTCACTCTATTAGTAGAGCCAATGAAGGTAGAAACGTGGAAAATACATTCAACAATTGAAGTCATTTGTTATCTCTTCTCAGGAATTGTTGGCTCAGGCATTGCCTTCTTTCTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCCGTCTTCTCTGCAATGTTCAACCCTCTTTGCACCATCGTTACAACTATTTTGGCAGCTATAATTCTTCATGAGGAGATTTTTACTGGAAGCTTGGTGGGGGGTGTGGCTGTAATTATTGGATTGTACGTTGTTCTTTGGGGAAAGGCCAAAGATTATGTGAAGGAAGAACATGGGGGAAAACGAGCTGTTGAAAAAGAGGAAGAGGATTGTGAATCAGCTTCAACGGACAGAAGTAGCTCTAAAATTGGTTTGGAGGAACCCCTTTTGTTTGAAGGAGGTACACATCAGATTGACAGCTAG 1134 44.09 MGLVEEYLPAMAMFGLQVTYAIMALLSRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRLSLDLKSFSLIFLAALVGATMNQNVYFEGVFLAGSSMATAMTNLIPAVTFVIATMVGMESLKMRSLRSMAKMGGTVICVSGAMCMALLRGPKLLNSSLGFGMKSSIFSVESGSPHAWLLGSLCVFGSCCCWSIWLILQVPASASYPDNLSLSAWMCLFATIQSMIVTLLVEPMKVETWKIHSTIEVICYLFSGIVGSGIAFFLQAWCVSKRGPVFSAMFNPLCTIVTTILAAIILHEEIFTGSLVGGVAVIIGLYVVLWGKAKDYVKEEHGGKRAVEKEEEDCESASTDRSSSKIGLEEPLLFEGGTHQIDS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3380559 3383139 + CmaCh05G006610.1 Cma05g00661 294779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00661 377 MobiDBLite consensus disorder prediction 334 353 - -
Cma05g00661 377 PANTHER WAT1-RELATED PROTEIN 10 339 - -
Cma05g00661 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 151 - -
Cma05g00661 377 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020|GO:0016021
Cma05g00661 377 Pfam EamA-like transporter family 12 130 IPR000620 GO:0016020|GO:0016021
Cma05g00661 377 MobiDBLite consensus disorder prediction 334 377 - -
Cma05g00661 377 PANTHER WAT1-RELATED PROTEIN 10 339 IPR030184 GO:0016021|GO:0022857
Cma05g00661 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00661 Cma-Chr5:3380559 Cma12g00827 Cma-Chr12:6097076 0 dispersed
Cma11g00430 Cma-Chr11:2109687 Cma05g00661 Cma-Chr5:3380559 2.26E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00661 - - csv:101213601 582.793