Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00670 | ATGGCTTTTCTAGAGGTAAAACAGAAACTCCTACGCGAGATTGAAGATCTAGGATTCCCAAGGGCCCGAGTTGTCCGAGCACTTCATAGTACTGGGAATGTCAGCACTGAAGCTGCAATTAATTGGCTTATTGATCATGAGAATGATTCAGATATAGATCAAATGCCCCTGGTAGCAATAGACATTGATCTTGAATCTCCTGAACCATTTCATATCACAGAGGAAATGAAAAGAAAGGCTAAGGAACTAAGGGATCAAATACGGAAAGAAAAAGAAAAAGAAGAAAAAAAGTTAGAAAGACAGAGGGAGAAGGACAGAATTCGTTCTGGTAAAGAATTACAAGAAGCAAAAAGAACTGCAGAAGAAGCTGAACGGAAACGCTATATAGACTCTAGGCAAGCTGATAAACAGGAGGAGCAGAGAGCAAGGAAAAAAGTTCTACAAAAACTTGAACAAGATAAGATAGAAAGAAGGAGGAATAGTGGAATGCTCTCTGAAAGGTCTGAAAGCCTTGATACAAAATCTAACGCCACCGAAGCAGGGAAAAATGATGAACTTAGATCGCAGAATTCACTGCCAGCAACTTCAGTTAGTAAAGCAGTTTCTATGAGAGAATGCTTAAGGTCTCTTAGGCGCCATCAAAAGGATGATTCTGATAAAGTGAGAACTGCCTACCGAACCCTCTTTATCTATGTCAGAAATGTAGCCAAAAATCCTGATGAGGAAAAGTTTAGGAAGATTCGACTCAGTAACCCTTTGTTCCAGGAGAGAGTTGGGAGTTTGAAAGGAGGGATAGAGTTTCTGGAGCTTTGCGGGTTTGAGAGAGGAGGAGAGTTTCTGTACCTTCCCCGGGATAAAGTCGACCGGGGGGCTTTAGTCACTGCTGGATCACTGTTAGAATCTGCAATGACAAATCCCTTTTTCGGTGCAATATAA | 936 | 41.35 | MAFLEVKQKLLREIEDLGFPRARVVRALHSTGNVSTEAAINWLIDHENDSDIDQMPLVAIDIDLESPEPFHITEEMKRKAKELRDQIRKEKEKEEKKLERQREKDRIRSGKELQEAKRTAEEAERKRYIDSRQADKQEEQRARKKVLQKLEQDKIERRRNSGMLSERSESLDTKSNATEAGKNDELRSQNSLPATSVSKAVSMRECLRSLRRHQKDDSDKVRTAYRTLFIYVRNVAKNPDEEKFRKIRLSNPLFQERVGSLKGGIEFLELCGFERGGEFLYLPRDKVDRGALVTAGSLLESAMTNPFFGAI | 311 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3443900 | 3449052 | + | CmaCh05G006700.1 | Cma05g00670 | 294788 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00670 | 311 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Cma05g00670 | 311 | MobiDBLite | consensus disorder prediction | 90 | 198 | - | - | |
| Cma05g00670 | 311 | MobiDBLite | consensus disorder prediction | 166 | 198 | - | - | |
| Cma05g00670 | 311 | SUPERFAMILY | UBA-like | 5 | 56 | IPR009060 | GO:0005515 | |
| Cma05g00670 | 311 | CDD | UBA_PUB_plant | 5 | 53 | - | - | |
| Cma05g00670 | 311 | SMART | PGNneu | 223 | 284 | - | - | |
| Cma05g00670 | 311 | Pfam | PUB domain | 219 | 289 | IPR018997 | - | |
| Cma05g00670 | 311 | Coils | Coil | 73 | 126 | - | - | |
| Cma05g00670 | 311 | Gene3D | - | 8 | 53 | - | - | |
| Cma05g00670 | 311 | PANTHER | UBX DOMAIN-CONTAINING PROTEIN 1-LIKE | 1 | 310 | - | - | |
| Cma05g00670 | 311 | MobiDBLite | consensus disorder prediction | 90 | 165 | - | - | |
| Cma05g00670 | 311 | Gene3D | - | 206 | 299 | - | - | |
| Cma05g00670 | 311 | SUPERFAMILY | PUG domain-like | 200 | 307 | IPR036339 | - | |
| Cma05g00670 | 311 | Coils | Coil | 136 | 156 | - | - | |
| Cma05g00670 | 311 | PANTHER | F13M7.16 PROTEIN | 1 | 310 | - | - | |
| Cma05g00670 | 311 | Pfam | UBA/TS-N domain | 11 | 43 | IPR015940 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g02112 | Cma-Chr4:14756552 | Cma05g00670 | Cma-Chr5:3443900 | 4.37E-08 | dispersed | |
| Cma05g00670 | Cma-Chr5:3443900 | Cma15g00974 | Cma-Chr15:5471654 | 4.17E-08 | dispersed | |
| Cma08g00962 | Cma-Chr8:6023388 | Cma05g00670 | Cma-Chr5:3443900 | 4.31E-110 | transposed | |
| Cma12g01001 | Cma-Chr12:8005448 | Cma05g00670 | Cma-Chr5:3443900 | 4.73E-113 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00670 | - | K24348 | csv:101210384 | 471.085 |