Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00672 ATGGGTCAAGGCACTCCCGGCGGACTCAACCAGCAGGGTGGTCTTCCTGGCGACCGCAAGCAAGATGATCCCAACAAGAAGGACAAAAAGTTCGAGCCAGCGGCGCCTCCGTCGCGTGTCGGCCGCAAGCAGCGGAAGCAGAAGGGTCCTGACGCCGCCTCCCGCCTACCGACGGTCACTCCACACACCAAGTGCAAGCTCCGCCTTCTGAAGCTCGATCGAGTCAAGGACTATTTGCTCATGGAGGAGGAGTTTGTTACCAATCAGGAACGGTTGAAGCCCCAGGAGGAGAAGAATGAAGAAGATAGATCTAAGGTCGACGACCTTCGTGGGTCGCCCATGAGCGTTGGGAATCTGGAGGAGCTGATTGACGAGAATCATGCGATTGTGTCGTCGTCTGTCGGTCCTGAGTACTATGTCGGGATCTTGTCGTTTGTTGACAAAGACCAACTGGAGCCTGGATGTGCGATTCTTATGCACAACAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGACGAGGTCGATCCCATGGTATCTGTTATGAAGATTGAGAAGGCTCCATTGGAATCCTACGCTGATATTGGTGGTTTAGATGCTCAGATCCAGGAGATTAAAGAAGCTGTAGAGCTTCCTCTTACTCATCCTGAGTTATATGAAGACATTGGAATTAAACCCCCCAAAGGAGTTATACTTTATGGGGAGCCTGGGACAGGGAAAACATTGCTCGCAAAGGCAGTGGCAAACTCCACTTCAGCCACTTTCTTGCGTGTAGTTGGAAGTGAATTGATCCAGAAGTACTTGGGAGATGGACCTAAATTGGTCAGGGAGCTCTTTAGAGTTGCAGATGATCACTCCCCATCAATTGTATTCATTGATGAAATCGACGCAGTCGGTACAAAGAGGTATGATGCTCATTCTGGTGGCGAGCGTGAGATTCAAAGGACCATGCTTGAATTGCTGAACCAGTTGGATGGGTTTGACTCAAGAGGAGATGTTAAAGTAATTCTTGCTACAAATAGAATCGAAAGCCTTGATCCTGCCCTTTTACGACCTGGAAGAATAGATAGAAAAATCGAATTTCCCCTTCCAGATATAAAGACAAGAAGACGCATTTTTCAGATTCATACATCAAGGATGACACTAGCTGAGGATGTGAACTTAGAAGAGTTTGTAATGACCAAAGACGAATTTTCTGGGGCTGATATCAAAGCAATTTGCACCGAAGCTGGCTTGCTCGCTCTAAGAGAACGTAGAATGAAGGTGACTCATGCAGACTTTAAGAAAGCAAAAGATAAGGTTATGTTCAAAAAGAAAGAGGGAGTTCCAGAAGGACTTTACATGTAA 1344 47.1 MGQGTPGGLNQQGGLPGDRKQDDPNKKDKKFEPAAPPSRVGRKQRKQKGPDAASRLPTVTPHTKCKLRLLKLDRVKDYLLMEEEFVTNQERLKPQEEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKIEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDHSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3457860 3461191 - CmaCh05G006720.1 Cma05g00672 294790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00672 447 SMART AAA_5 225 364 IPR003593 -
Cma05g00672 447 MobiDBLite consensus disorder prediction 90 112 - -
Cma05g00672 447 Gene3D - 182 362 IPR027417 -
Cma05g00672 447 PANTHER BNAA08G13550D PROTEIN 35 447 - -
Cma05g00672 447 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 35 447 - -
Cma05g00672 447 CDD AAA 195 362 - -
Cma05g00672 447 Pfam Proteasomal ATPase OB C-terminal domain 116 169 IPR032501 -
Cma05g00672 447 Pfam AAA+ lid domain 384 428 IPR041569 -
Cma05g00672 447 Pfam ATPase family associated with various cellular activities (AAA) 229 362 IPR003959 GO:0005524|GO:0016887
Cma05g00672 447 ProSitePatterns AAA-protein family signature. 332 350 IPR003960 GO:0005524|GO:0016887
Cma05g00672 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 440 IPR027417 -
Cma05g00672 447 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 82 434 IPR005937 GO:0005737|GO:0030163|GO:0036402
Cma05g00672 447 MobiDBLite consensus disorder prediction 90 109 - -
Cma05g00672 447 Gene3D - 114 181 IPR012340 -
Cma05g00672 447 MobiDBLite consensus disorder prediction 1 59 - -
Cma05g00672 447 Gene3D - 367 441 - -
Cma05g00672 447 MobiDBLite consensus disorder prediction 19 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00672 K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2 - csv:101209885 838.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01701 Cma-Chr2:9581918 Cma05g00672 Cma-Chr5:3457860 0 dispersed
Cma05g00672 Cma-Chr5:3457860 Cma19g00134 Cma-Chr19:827907 0 dispersed
Cma17g00904 Cma-Chr17:6830126 Cma05g00672 Cma-Chr5:3457860 2.42E-104 dispersed
Cma12g01003 Cma-Chr12:8022432 Cma05g00672 Cma-Chr5:3457860 6.88E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g407 . . . . . . . . Cmo05g00705 . . Cma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00597 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002192 2 2 1 3 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00672 Cma_Chr05 FPKM 39.588505 42.90818 26.413197 26.755827 43.799469 38.501492 42.14909 34.362022 34.782398 36.70388