Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00673 ATGTTTTTTTTTATTCCTGATGATGTATCAATTGGATATGGGGAAACCGAAGGATTTGGTTCGTTGAAAACCGAGGAACCTGGGAGTTGCTTTCTGGCAAGACTAAGAACTGCTGCATCGATTAGTGACGTTCAAATATCAGACTGCAAACAGATGGATAGCCCTTTAACGTCGATCTCAGCCCCTAATTCCTCACCTGTCTCGAATCCTGGTTCGAATGATGAAAACCCGCGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGTTATGTTGGGGGAGAGACAAGGATTGTGAGTGCTCCAAGGGATATTACATATGAGGAGTTGATGGTTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCTTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCCGGTGACGGATTCACTAGGCTCAGGATATTCTTGTTTTCAAATCCGGAACAAGAATGTTCCTTGCCTTTTGTGGATGGGGATGAGAGGGATACTGAGAGGCGATATGTAGATGCTCTTAATAATTCGAATGACATGAATGATTTTGTTCGACAACAGATGCCAGATTCCCCTGTAATTAGTGGCATAGATGATGTGCACGGGATAGAACATTTTTTGAACCCACTGAATATTGAAGGTAGTCTTCACACCCAGAGGAGTTGTGAGCCCTTGTCACAATATCAGCTGCATCAGCTCGCAGTCCCTTATATTGGTTCTGGGCAGCAACAACAATCTGTGGCTCAAAGGTATAGTGAAATGGAAGCTCCGTGGAGTCCTGCTTTCGTTTCACCCAGGCATCCTGGTATGTATGATCCAAGACCAGTGGGAGAATATCCATCTTCTCCATCTGCATGGTACCGTCTGCCATTCCCTGATTTTCCAGATAAATACTTTGAAAGAATGCCTGAAGACTACGCCAGGGAGCAAATGAATCACCAGTATATGTATGAACATCAACCACAATCTAACGAGAACATTGTCTGGCTGCCAAATGGACCTATTAGTGAAAAGTCAGGGTTCCCTGGTAATATATTACACGGACATGGTGTTCCTGATGGGAATAGTTCTTGTGAACACTGTCGATCAAATTATCATCGGTATCAAACACACCTGGAGCAAGCTAATATGTTAAATGGACTTCCTCATGAATACTCTCAGAATAGGGAGGCATTGATGCAAAAGGCTGACACGAAGTTCCATCATGGTATTTTCCCAAATGAGCAGAATATTAATGATCCTCGATCTGCTTATAACGAGGCACCACCCCATGAGAGAGGATGGATTATGCAACACCAGATGAGCGTGCGGGGGGATGACACGAGAACATATGTTTCTGGGGCTGGACGATTGAATGATCACTACATTGTGGATGGCTCTGGCTCAAATTTTCCTCCTACACAAGGTAATATAACTGATGGCTACCAAGCTTCCATGAATTTTCATGATGAGGTATTTCGTGACCAAGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCTGAAGATCGTGGTGTTGGTTATATGAATATGCCTTATGGATATGGAGCAGATCCTCAATATCCTCCGGTGGCACACAGGCATATGCCTGGAAATGCTGCCTGGCGAAATGTTCAGAACCCGTCACATGTTGCTCCTCCTTATGAAGCATCTGTTTCCATTCAGCAAGGGAATGTGACTGTTAATCCAGGATATATCAGAGCCATGCAGGAGGGTAATCCCCGCATTCATATTGGTACGGACCATCAAAATCCTTGGCATGAATCCTCACAGAAAATGTTGGGTATTGAGGGAGCAACTGGTTCAGAGCATTTACCTGCACTTGTTTTGAAGACCAGTTCGACCATGGTTGGCCATGACAATCAACAATTCACAAATTTAGAACATATCCAACCACATCTAGATAAGATAAACCTCGCCGCTTCTCCTTTGCAGAGATCAGATTCATCTTCAGCATTTATTCATGAAAAAATGGTTTCACCTTTTAATCCTAGCCAAAATCCACAACCGAGGACTGTTAGTGTGATTAATGAAGCTATGATGATGGAAAGGAAAATTGTGCCTGGGGAAGGAAACGAACACATGATAACTGATATGGGGGAAGCTGACATTTCTGAAGCACGCGTTGTATCTCATCCAGAGCAGAATAACACTGATGACACATATTCTGAGGTTGCACCCCCTGAATCGTTAAATTCAATTTGCACAAACACTCCAGTAGATAATGGTGATGACTTGAAATCTGCTGTAGAGACTCTTGAAAATCCAAAACTATCTGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGAAAAGAGCAGCATTAGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCTAAGGAGACCTGATTCAATAGGGAAAAAAGAGACAGCTAATGAGCTAGGCTCCTTGAATGCCCATGGGGAACCTGAGTTGGAAACTGGGAGTGAGAATCAAAGCTCCACAATTGAGCCAACAAAGGCTGAAGAAGAAGCCATTTCAAGAGGATTACAAACGATTAACAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTATCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATAAAAGCTAGCTGTTTTGCTGGACGACCCTCAGAAAGGGAACGTCTGATTGCAGATTTCTGGAAGGAAGCTTTGATATTAAGTTCCTTACACCATCCAAATGTTGTTTCCTTCTATGGCATTGTTCGTGATGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTAAATGGATCGTTGAAACAGTTTTTGCACAAGAAGGACAGGACAATTGATCGTCGTAAGAGACTAATTATAGCCATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTGGTGAATATGAGAGATCCTCAGAGGCCTGTTTGCAAGATCGGTGATTTGGGATTGTCGAAGGTGAGACAACACACGTTAGTATCGGGAGGGGTTCGTGGAACTTTACCCTGGATGGCACCCGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAAGTACTCACGGGAGATGAACCGTATTCAGATATGCATTGTGCTTCTATAATCGGAGGAATTGTAAACAATTGTTTACGTCCAGAAATCCCGACATGGTGCGACCCGGAATGGAAGGCTTTAATGTCAAGCTGCTGGGACTCAGACCCAGCTATGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATGTGAAATACATAGTTTTTGCAACTTTATGGCCACCTGCTGATGATTCTCAAAGTATAAGAAGGCTATTAGATGCGATGTCATTCTCTTGTGGAATCCTTTTCGTGTTCTATACACTGCATTGCTGGGAGACTACAAGTACAGATATGAAGGAGATCCATGATAGGCAATGGGAATGA 3636 43.18 MFFFIPDDVSIGYGETEGFGSLKTEEPGSCFLARLRTAASISDVQISDCKQMDSPLTSISAPNSSPVSNPGSNDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSAPRDITYEELMVKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSNPEQECSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQMPDSPVISGIDDVHGIEHFLNPLNIEGSLHTQRSCEPLSQYQLHQLAVPYIGSGQQQQSVAQRYSEMEAPWSPAFVSPRHPGMYDPRPVGEYPSSPSAWYRLPFPDFPDKYFERMPEDYAREQMNHQYMYEHQPQSNENIVWLPNGPISEKSGFPGNILHGHGVPDGNSSCEHCRSNYHRYQTHLEQANMLNGLPHEYSQNREALMQKADTKFHHGIFPNEQNINDPRSAYNEAPPHERGWIMQHQMSVRGDDTRTYVSGAGRLNDHYIVDGSGSNFPPTQGNITDGYQASMNFHDEVFRDQVVPSGQHMCVPPPEDRGVGYMNMPYGYGADPQYPPVAHRHMPGNAAWRNVQNPSHVAPPYEASVSIQQGNVTVNPGYIRAMQEGNPRIHIGTDHQNPWHESSQKMLGIEGATGSEHLPALVLKTSSTMVGHDNQQFTNLEHIQPHLDKINLAASPLQRSDSSSAFIHEKMVSPFNPSQNPQPRTVSVINEAMMMERKIVPGEGNEHMITDMGEADISEARVVSHPEQNNTDDTYSEVAPPESLNSICTNTPVDNGDDLKSAVETLENPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETALRRPDSIGKKETANELGSLNAHGEPELETGSENQSSTIEPTKAEEEAISRGLQTINNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWEVLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAMRPSFSEISQKLRNMAAAMNVKYIVFATLWPPADDSQSIRRLLDAMSFSCGILFVFYTLHCWETTSTDMKEIHDRQWE 1211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3463747 3469671 + CmaCh05G006730.1 Cma05g00673 294791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00673 1211 SUPERFAMILY Protein kinase-like (PK-like) 869 1143 IPR011009 -
Cma05g00673 1211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1007 1019 IPR008271 GO:0004672|GO:0006468
Cma05g00673 1211 SMART PB1_new 93 178 IPR000270 GO:0005515
Cma05g00673 1211 Pfam Protein tyrosine and serine/threonine kinase 883 1145 IPR001245 GO:0004672|GO:0006468
Cma05g00673 1211 MobiDBLite consensus disorder prediction 840 868 - -
Cma05g00673 1211 CDD STKc_MAP3K-like 888 1145 - -
Cma05g00673 1211 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 69 1155 - -
Cma05g00673 1211 ProSiteProfiles Protein kinase domain profile. 882 1157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00673 1211 MobiDBLite consensus disorder prediction 55 75 - -
Cma05g00673 1211 ProSitePatterns Protein kinases ATP-binding region signature. 888 909 IPR017441 GO:0005524
Cma05g00673 1211 PRINTS Tyrosine kinase catalytic domain signature 964 977 IPR001245 GO:0004672|GO:0006468
Cma05g00673 1211 PRINTS Tyrosine kinase catalytic domain signature 1072 1094 IPR001245 GO:0004672|GO:0006468
Cma05g00673 1211 PRINTS Tyrosine kinase catalytic domain signature 1116 1138 IPR001245 GO:0004672|GO:0006468
Cma05g00673 1211 PRINTS Tyrosine kinase catalytic domain signature 1001 1019 IPR001245 GO:0004672|GO:0006468
Cma05g00673 1211 MobiDBLite consensus disorder prediction 849 864 - -
Cma05g00673 1211 Gene3D Transferase(Phosphotransferase) domain 1 969 1159 - -
Cma05g00673 1211 CDD PB1_UP2 82 178 - -
Cma05g00673 1211 Pfam PB1 domain 94 178 IPR000270 GO:0005515
Cma05g00673 1211 Gene3D - 97 180 - -
Cma05g00673 1211 PANTHER SERINE-THREONINE PROTEIN KINASE 69 1155 - -
Cma05g00673 1211 SMART serkin_6 882 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00673 1211 Gene3D Phosphorylase Kinase; domain 1 868 968 - -
Cma05g00673 1211 SUPERFAMILY CAD & PB1 domains 95 184 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00673 Cma12g01005 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00895 Cma-Chr4:4660952 Cma05g00673 Cma-Chr5:3463747 6.05E-33 dispersed
Cma05g00673 Cma-Chr5:3463747 Cma06g01264 Cma-Chr6:8399165 8.13E-25 dispersed
Cma16g00771 Cma-Chr16:4232914 Cma05g00673 Cma-Chr5:3463747 1.13E-33 dispersed
Cma12g01005 Cma-Chr12:8025850 Cma05g00673 Cma-Chr5:3463747 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68582 PF07714 PK_Tyr_Ser-Thr 2.50E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00673 - - cmax:111492314 2268.43