Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00679 ATGCAATCCTTCGCCGGCGGCTGGGCTGCCGTCGCCACCGCCAAACCCCTCTGCTACTCCTGCAAGTCTGCACCCGCTGCCCTCTTCTGCCGCCACGACGCTGCTTTCCTCTGCCTTCGCTGCGACGCCCAAATCCACTCCCACACCACCGGCACGCGCCACCCACGTGTCTGGCTCTGTGAGGTCTGCGAGCAAGCTCCAGCCACCATCACCTGCAATGCCGACGCCGCCGCTCTCTGTCCCTCTTGCGATGCCGACATCCACTCTGTTAACCCCCTTGCTCGCCGCCACGATCGCTCTGCTATCCAACCCTTCTACGACTCACCCCCTTCCGCCTCCGTTGCCTCTGTCTTCAAATTTCTCCTCCCGACTCAACACCAACACGATGTCGGTCACCCTGATTTGAAATCCGAGGATATCTTCTTCTCCGATATGGATTCGTTGATCGATTTCGATTACCCAACTGCCGGCGACGGAGTTGTGCCTGATCAATCAAATCCCGGAACAGAGTCCACTACGCAACCCGCCGATTACTCCACCGGAAACTTCTGCGGTTTCGAGCTCTGTAGTACTCGATCTAAACTCGACGCCATTAGCTACCCATCTCATAATCTTAGCCATAGCGTCTCGTCGTCTTCCTTAGACGTGGTTGCTGTGCCAGATCGGAACACGGCCTCCGACGCGTCGTATCCAGCAGGACAGACAGCGCTTCCTACGACGGAGAAGGCGGTCCAATTACGGGGAATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACGATTCGGTATGCTTCAAGGAAAGCTTATGCGGAAATTCGGCCAAGGGTTAAAGGGCGGTTCATTAAACGGAGTGAAATGAAGTCGGAAATGGAGAGAATGTACGCCGGAGCCGGCGTGGGGTACATGTCAAGGGACGGCCAATACGGCGTCGTCCCAAGCCTTATAGTTTGA 981 56.07 MQSFAGGWAAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIHSHTTGTRHPRVWLCEVCEQAPATITCNADAAALCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVASVFKFLLPTQHQHDVGHPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPDQSNPGTESTTQPADYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQTALPTTEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFIKRSEMKSEMERMYAGAGVGYMSRDGQYGVVPSLIV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3501656 3502954 + CmaCh05G006790.1 Cma05g00679 294797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00679 326 ProSiteProfiles CCT domain profile. 251 293 IPR010402 GO:0005515
Cma05g00679 326 SMART bboxneu5 55 102 IPR000315 GO:0008270
Cma05g00679 326 SMART bboxneu5 13 53 IPR000315 GO:0008270
Cma05g00679 326 Pfam CCT motif 251 293 IPR010402 GO:0005515
Cma05g00679 326 CDD Bbox1_BBX-like 59 102 - -
Cma05g00679 326 Pfam B-box zinc finger 15 50 IPR000315 GO:0008270
Cma05g00679 326 Pfam B-box zinc finger 57 100 IPR000315 GO:0008270
Cma05g00679 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 323 IPR045281 GO:0009909
Cma05g00679 326 MobiDBLite consensus disorder prediction 156 176 - -
Cma05g00679 326 MobiDBLite consensus disorder prediction 162 176 - -
Cma05g00679 326 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 5 323 - -
Cma05g00679 326 CDD Bbox1_BBX-like 17 59 - -
Cma05g00679 326 ProSiteProfiles Zinc finger B-box type profile. 13 59 IPR000315 GO:0008270
Cma05g00679 326 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00679 Cma10g00418 CCT
Cma05g00679 Cma11g00415 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00679 Cma-Chr5:3501656 Cma11g00415 Cma-Chr11:2035908 6.95E-102 dispersed
Cma10g00418 Cma-Chr10:1909783 Cma05g00679 Cma-Chr5:3501656 2.09E-99 wgd
Cma10g00418 Cma-Chr10:1909783 Cma05g00679 Cma-Chr5:3501656 2.09E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35075 PF00643 zf-B_box 1.70E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00679 - - cmax:111492359 642.499