Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00690 ATGGCTACTGATTCTTCCTTTGATGGTGCTATTTTCGACTCGCTGAAATGTAGTAAGTTGACTATTCAAGAGAAGAGAGAACTTGTTTATGAAATTTCGAGGTCACACGGAGCGTGTGAGAAACTGCAGTCATGGAGTCGTCAAGACATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGGAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTCGTATCCGAAAACAAGTCATCGGTGCTTGAGGTTTCGAAAAACGTTGAGCCACAGTCTCCTGCAAGTGGTCATAAAACTACCAAAAGGCAGAGGAAATCCGATCATCTAGTTCCTACAAGTGACTTTCCGAGCACTAGTTCTCATAATGATTCGGGTCGTACAGTGAGCTGCAAGAACTTGGCTTGTCGAGCGACTCTAAATCCAGAAGATACGTTTTGTAGAAGGTGTTCGTGCTGCATCTGTCGTCAGTATGACGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCGTTTCAAGGTGACTCGTGCAACATGTCGTGTCATCTCGAATGTGCTTTAAAAGATGAAAGATCGGGCATTTTGAAAGCCGGACAAAGCAGGGGAGTTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAACTAAACGATTTGCTTGGGTGCTGCAGAAAGCAACTAGTTCATGCGAAAGAAACACGAAGGGTCGACATACTGTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTTGATGACTCAGTGAAGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGTGCACCGGTAAAGATGGGTCGAGGTATCGTAAACAGGCTTTTATCCGGACCCAACGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTCGATTCGATGCTCTCCAGCAAATCCTTACATATTGTGCCTAATCCTGACATTCAAGATGCAAGTTTTGTTCCGACAAACATGGTTCGATTCGAAGATGTTCGGTCGACATCCCTCACTCTTGTTTTGAGTTGTGAATATGGATCATCCTCTGAGAATCGGGTCGGCTTCACGTTATGGCATCGTAAGGCGGATGATGCAGATTATCCAACAGAACCAACATATATTCTACAACAACCGAAGGCGAGGTGTGTCGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTTTGTTTGAAGGGACAAGGGAGTTGAGGGATTTTGAAGTTCAATTCTCAACAGTTAGGGAGGTAGAAGAGAACCCAGGTTGTTTAGAAATTGAGAGAAGCCAAAGCCATGCTACCAACTGTAGCGACCTTTCGAATCCTTCTTCGGTTGAAGACGAAACTACCGACATTCTTCCCTATAGTGATCGAACCGATAACGTAGGAAAGAACTCGACCGCCCATTCAAAGGGCACAGAAATGCATTCCTCTGCTATTTTATCCACCGATGCTTTTAACCTCAGTGACGATGGTGAAGAAGGAACAGCAGCAGGAACAGTACCTGTGCTGGATGAGGCAAATGCTGCTGGAATTGTATGTTTGATTCCCAACTCTGTCGGATCAAAGCTCGAGAACAGGCATGGACCATCTGCGCCGAAACTCAACACCAATAATCAATTAGGCACTCTGGTTCGGTCTGGAATGGAGCGCCAGCCGTTCGTTGGCTGTTCTGAAGATGGCTTGCCTATTACACCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGGGGTGAGAGACTGGAATCCAACTGCAAGGACGTTGACAACAGGACTCGAAAAGGTGGGGAACCTCAAGACGGTGGCACGTCGAAGATGCGAACGGGGGAAAGACAGGACGATAAATGTACTGAAAATGGCATTTCGGATCGGGATTTTGAACACTATGTGAAGGTTATTCGATGGTTAGAGTGCGAAGGACATATCGAAAAAAATTTCAGACAGAAGTTTCTTACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAAGTGTTTGTGGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCGGAATGCATATCGAGCAAAAAACCAACGACAACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2196 44.95 MATDSSFDGAIFDSLKCSKLTIQEKRELVYEISRSHGACEKLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSENKSSVLEVSKNVEPQSPASGHKTTKRQRKSDHLVPTSDFPSTSSHNDSGRTVSCKNLACRATLNPEDTFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGILKAGQSRGVDGSFYCVSCGKLNDLLGCCRKQLVHAKETRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDDSVKKLEAEVGPIAGAPVKMGRGIVNRLLSGPNVQKLCASAIELLDSMLSSKSLHIVPNPDIQDASFVPTNMVRFEDVRSTSLTLVLSCEYGSSSENRVGFTLWHRKADDADYPTEPTYILQQPKARCVVMGLSPATEYHFKIVLFEGTRELRDFEVQFSTVREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYSDRTDNVGKNSTAHSKGTEMHSSAILSTDAFNLSDDGEEGTAAGTVPVLDEANAAGIVCLIPNSVGSKLENRHGPSAPKLNTNNQLGTLVRSGMERQPFVGCSEDGLPITPCKLEVLKDSLGRGERLESNCKDVDNRTRKGGEPQDGGTSKMRTGERQDDKCTENGISDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTTPPGFCMKLWH 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3595253 3598874 + CmaCh05G006900.1 Cma05g00690 294808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00690 731 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 731 IPR044514 GO:0010048|GO:0040029
Cma05g00690 731 MobiDBLite consensus disorder prediction 89 103 - -
Cma05g00690 731 ProSiteProfiles Fibronectin type-III domain profile. 340 442 IPR003961 GO:0005515
Cma05g00690 731 SUPERFAMILY Fibronectin type III 345 417 IPR036116 GO:0005515
Cma05g00690 731 MobiDBLite consensus disorder prediction 116 132 - -
Cma05g00690 731 MobiDBLite consensus disorder prediction 89 132 - -
Cma05g00690 731 Pfam PHD - plant homeodomain finger protein 136 255 IPR032881 -
Cma05g00690 731 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 731 - -
Cma05g00690 731 MobiDBLite consensus disorder prediction 454 495 - -
Cma05g00690 731 MobiDBLite consensus disorder prediction 603 639 - -
Cma05g00690 731 CDD FN3 341 416 IPR003961 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00690 - - - csv:101222501 1283.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00690 Cma-Chr5:3595253 Cma12g00206 Cma-Chr12:970064 1.90E-16 dispersed
Cma10g00392 Cma-Chr10:1816786 Cma05g00690 Cma-Chr5:3595253 3.47E-65 wgd
Cma11g00387 Cma-Chr11:1918549 Cma05g00690 Cma-Chr5:3595253 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g380 . . . . . . . . Cmo05g00725 . . Cma05g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe11g00638 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00387 CST 101 573 PHD Gene Family AT4G30200 53.3 7.1e-136 481.9
Cma05g00690 . 4 468 PHD Gene Family AT4G30200 53.6 2.6e-130 463.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00690 Cma_Chr05 FPKM 45.682827 50.090153 31.987253 31.985058 21.595337 22.660715 20.089739 39.30138 38.791199 36.390347