Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00690 ATGGCTACTGATTCTTCCTTTGATGGTGCTATTTTCGACTCGCTGAAATGTAGTAAGTTGACTATTCAAGAGAAGAGAGAACTTGTTTATGAAATTTCGAGGTCACACGGAGCGTGTGAGAAACTGCAGTCATGGAGTCGTCAAGACATTCTACAAGTCCTGTGTGCAGAGATGGGGAAAGAAAGGAAATATACAGGCTTGACGAAGCAGAAAATAATAGAGCATCTTTTGAGACTCGTATCCGAAAACAAGTCATCGGTGCTTGAGGTTTCGAAAAACGTTGAGCCACAGTCTCCTGCAAGTGGTCATAAAACTACCAAAAGGCAGAGGAAATCCGATCATCTAGTTCCTACAAGTGACTTTCCGAGCACTAGTTCTCATAATGATTCGGGTCGTACAGTGAGCTGCAAGAACTTGGCTTGTCGAGCGACTCTAAATCCAGAAGATACGTTTTGTAGAAGGTGTTCGTGCTGCATCTGTCGTCAGTATGACGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCGGAGCCTCCGTTTCAAGGTGACTCGTGCAACATGTCGTGTCATCTCGAATGTGCTTTAAAAGATGAAAGATCGGGCATTTTGAAAGCCGGACAAAGCAGGGGAGTTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAACTAAACGATTTGCTTGGGTGCTGCAGAAAGCAACTAGTTCATGCGAAAGAAACACGAAGGGTCGACATACTGTGTTATCGTGTCTCTTTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTTGATGACTCAGTGAAGAAGCTTGAAGCTGAAGTGGGACCAATAGCTGGTGCACCGGTAAAGATGGGTCGAGGTATCGTAAACAGGCTTTTATCCGGACCCAACGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTACTCGATTCGATGCTCTCCAGCAAATCCTTACATATTGTGCCTAATCCTGACATTCAAGATGCAAGTTTTGTTCCGACAAACATGGTTCGATTCGAAGATGTTCGGTCGACATCCCTCACTCTTGTTTTGAGTTGTGAATATGGATCATCCTCTGAGAATCGGGTCGGCTTCACGTTATGGCATCGTAAGGCGGATGATGCAGATTATCCAACAGAACCAACATATATTCTACAACAACCGAAGGCGAGGTGTGTCGTGATGGGACTATCACCTGCTACTGAATATCATTTCAAAATTGTTTTGTTTGAAGGGACAAGGGAGTTGAGGGATTTTGAAGTTCAATTCTCAACAGTTAGGGAGGTAGAAGAGAACCCAGGTTGTTTAGAAATTGAGAGAAGCCAAAGCCATGCTACCAACTGTAGCGACCTTTCGAATCCTTCTTCGGTTGAAGACGAAACTACCGACATTCTTCCCTATAGTGATCGAACCGATAACGTAGGAAAGAACTCGACCGCCCATTCAAAGGGCACAGAAATGCATTCCTCTGCTATTTTATCCACCGATGCTTTTAACCTCAGTGACGATGGTGAAGAAGGAACAGCAGCAGGAACAGTACCTGTGCTGGATGAGGCAAATGCTGCTGGAATTGTATGTTTGATTCCCAACTCTGTCGGATCAAAGCTCGAGAACAGGCATGGACCATCTGCGCCGAAACTCAACACCAATAATCAATTAGGCACTCTGGTTCGGTCTGGAATGGAGCGCCAGCCGTTCGTTGGCTGTTCTGAAGATGGCTTGCCTATTACACCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGGGGTGAGAGACTGGAATCCAACTGCAAGGACGTTGACAACAGGACTCGAAAAGGTGGGGAACCTCAAGACGGTGGCACGTCGAAGATGCGAACGGGGGAAAGACAGGACGATAAATGTACTGAAAATGGCATTTCGGATCGGGATTTTGAACACTATGTGAAGGTTATTCGATGGTTAGAGTGCGAAGGACATATCGAAAAAAATTTCAGACAGAAGTTTCTTACTTGGTACAGCTTGAGAGCATCCCAACAAGAAGTGAAGATTGTGAAAGTGTTTGTGGATACCTTCATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACTTTTTCGGAATGCATATCGAGCAAAAAACCAACGACAACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2196 44.95 MATDSSFDGAIFDSLKCSKLTIQEKRELVYEISRSHGACEKLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSENKSSVLEVSKNVEPQSPASGHKTTKRQRKSDHLVPTSDFPSTSSHNDSGRTVSCKNLACRATLNPEDTFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGILKAGQSRGVDGSFYCVSCGKLNDLLGCCRKQLVHAKETRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDDSVKKLEAEVGPIAGAPVKMGRGIVNRLLSGPNVQKLCASAIELLDSMLSSKSLHIVPNPDIQDASFVPTNMVRFEDVRSTSLTLVLSCEYGSSSENRVGFTLWHRKADDADYPTEPTYILQQPKARCVVMGLSPATEYHFKIVLFEGTRELRDFEVQFSTVREVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYSDRTDNVGKNSTAHSKGTEMHSSAILSTDAFNLSDDGEEGTAAGTVPVLDEANAAGIVCLIPNSVGSKLENRHGPSAPKLNTNNQLGTLVRSGMERQPFVGCSEDGLPITPCKLEVLKDSLGRGERLESNCKDVDNRTRKGGEPQDGGTSKMRTGERQDDKCTENGISDRDFEHYVKVIRWLECEGHIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSECISSKKPTTTPPGFCMKLWH 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3595253 3598874 + CmaCh05G006900.1 Cma05g00690 294808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00690 731 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 731 IPR044514 GO:0010048|GO:0040029
Cma05g00690 731 MobiDBLite consensus disorder prediction 89 103 - -
Cma05g00690 731 ProSiteProfiles Fibronectin type-III domain profile. 340 442 IPR003961 GO:0005515
Cma05g00690 731 SUPERFAMILY Fibronectin type III 345 417 IPR036116 GO:0005515
Cma05g00690 731 MobiDBLite consensus disorder prediction 116 132 - -
Cma05g00690 731 MobiDBLite consensus disorder prediction 89 132 - -
Cma05g00690 731 Pfam PHD - plant homeodomain finger protein 136 255 IPR032881 -
Cma05g00690 731 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 731 - -
Cma05g00690 731 MobiDBLite consensus disorder prediction 454 495 - -
Cma05g00690 731 MobiDBLite consensus disorder prediction 603 639 - -
Cma05g00690 731 CDD FN3 341 416 IPR003961 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00690 Cma-Chr5:3595253 Cma12g00206 Cma-Chr12:970064 1.90E-16 dispersed
Cma10g00392 Cma-Chr10:1816786 Cma05g00690 Cma-Chr5:3595253 3.47E-65 wgd
Cma11g00387 Cma-Chr11:1918549 Cma05g00690 Cma-Chr5:3595253 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00690 - - csv:101222501 1283.09