Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00706 ATGGTGGGTGAGGTGGCAATGGAGAAGAATAAGAAAGTAAGGGGAGAGAACAAATTTGAAAGAAGCCATTTTGATGTGTTGGGAATTTGCTGTTCTTCAGAAGTCCCTCTCATTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTTATTGTCCCAACAAGAACTCTCATTGTCGTTCATGATTCCCTCCTCGTTTCTCAGCTTCAAATCGTGAAAGCACTAAATGAAGCAAGATTGGAGGCAAATGTACAAGTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGGTTGCTTCTAACAGCATCCTTTTTGAAGTATGTCTACCACCCATTGCGGTGGCTGGCCATCGCTGCGGTCGCCGCGGGCATCTTTCCCATTCTCCTAAAAGCCATTTCCGCCGTTCGCCATCTCAGGATCGATGCCAACATTCTTGCCATTGTTGCTGTGGTGGGGACAATTAGTATGAATGACTACATGGAAGCTGGGAGCATAGTGTTTTTGTTTTCCATTGCTGAATGGCTGGAGTCAAGAGCAAGCCACAAGGCCAATGCTGCAATGTCCTCGCTCATGAGCCTGGCCCCTCAAAAGGCCATCATAGCTGAAACTGGAGAGGTTGTGGCGGTAAAAGAGGTGGAATTGAAGAGTGTGTTGGCAGTGAAGGGTGGTGAAGTTATTCCCATTGATGGCATTGTTGTGGATGGAAAATGTGATGTTGATGAGAAAACTTTGACTGGAGAAACTTTCCCAGTTCCCAAACTTAAAGATTCTCTCGTTTGGGCTGGTACCATCAACTTAAATGGTTATATTAGTGTTCAAACCACTGTTGTTGCTGAAGACTGCGTGGTCGCAAAAATGGCTGAGTTTGTCGAAGAAGCTCAAAACAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACTCCAGCTTGTGTAGCAGCCATTCCAGCTGCATTCAGAGTTCACAATCTCAGCCATTGGTTTCACTTAGCTCTGGTGGTCTTGGTGAGTGCATGTCCCTGTGCCCTTATCCTCTCCACCCCGGTCGCCGCCTTCTGCGCCCTCACGAAGGCCGCCATGGCCGGTGTTCTCATCAAAGGCAGCGACCACCTTGAAGTTCTTGCAAAGATTAAGGTTGTAGCCTTCGACAAGACTGGCACAATCACCAGAGGTGAATTTGTTGTAACAAATTTTCAAGCTCTACGAGATGATATCAGCTTCCACACCTTACTTCATTGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTCAACCATGCAAAGCTGCTTTCTATTGATATTAAACCTGAAAAAGTTGAGGAATTTGAGAACTTTCCAGGAGAAGACGAGGAAATGAAACAAGGCCAAACCCTTGGATATGTATTTTGTGGGGAGATGGCTGTTGGAGCCTTTGGTCTTTCGGATTCTTGTCGGTCAGGAGCTAAAGAAGCCATGGAGCAGCTCAAGAGTCTTGGCATTAAAACAGCTATGCTCACTGGGGACTGTAGTGCAGCCGCCATGCACGCCCAACAACAGCTGGAGAACGCGGTTGATGTAATCCATTCAGAGCTTCTTCCAAAGGAGAAAGCAAATATGATAAAAGAATTCAAAAGGGATTATGGAGCAACCGCCATGGTTGGCGATGGCTTAAATGATACCCCAGCATTAGCCATAGCTGATATTGGCATATCAATGGGCATTTCTGGTTCACCTCTCGCTACTCAAACTGGGAATGTCATCTTAATGTCAAATGACATCACAAAAATCCCACAAGCCATCAAACTAGCTAGGAAATCTCATGCAAAAGTTGTTCAAAATGTCATTTTGTCAATCACTACCAAGATTGCAATCCTTGGCTTGGCCATCGCCGGACATCCGCTCGTTTGGGCGGCCGTTCTCGCCGATGTCGGTACCTGCCTATTGGTCATCTTGAACAGCATGCTTCTCTTGAGAGGAAGTGATCATAAGCATGGGAACAAATGTTGCAAATCTTCCAAGCTATGCTCGATGAAACATGGACGATGTGATGGTAGTAACACTCGACCCTCTCATCATCATCATCATCACGATCATCATCACCATAGTCATCGATGTCATGTCGTTGATGATAAATCGCCTAGTCGAGAAAATCATGTCCATAAGCATTGTTGTGAGAAAAAGGATCATAATCTTCAGCTTCCTCAAGATCACAATGGAGATTGTGGGGATAAATTTCATCACAATCATTCAAACAATGGGAATTGTTCAAAGAAAGTTGGTGAACCCAATTGTAATTGCCACTCACATCATGTAGCTATCGACATACATGAAGGCGTCTTAGCCAAAGACTTCGATGTAGATGGAGAGTGTACTCTAGCTGATTCAATTGCCATTTCCATTTTTATTATTATGAACAAAGGCATTGGTGGTGGAACTGGTCCCACCGCAGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACATTGTCGACAATTTCACCCATCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTTTCAGAACTTAAGCAGGCAGCAATCTTTTCTGGATTTGCTTCACTAAACGACCACGTGGAGCAAAGAATCGTGGAATTCAATATGCAGGCGGAGCAGACCGACCGTATCCTATCTAAAATTGGTGAAGAAGCTGCTGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTTGTTGTCTAGCAGCCATTCCAGCTGCATTGCTAGTTCTGTCTCGACCAATGGTTTCATCACTTAGCTCTGGTGGTCTTGGTGGTCTTAGTGAGGGCAATCTCCCTGTGCCCTAA 2997 45.05 MVGEVAMEKNKKVRGENKFERSHFDVLGICCSSEVPLIENILKPLEGIKQISVIVPTRTLIVVHDSLLVSQLQIVKALNEARLEANVQVNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAIAAVAAGIFPILLKAISAVRHLRIDANILAIVAVVGTISMNDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMSLAPQKAIIAETGEVVAVKEVELKSVLAVKGGEVIPIDGIVVDGKCDVDEKTLTGETFPVPKLKDSLVWAGTINLNGYISVQTTVVAEDCVVAKMAEFVEEAQNNKSKTQRFIDECAKYYTPACVAAIPAAFRVHNLSHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLAKIKVVAFDKTGTITRGEFVVTNFQALRDDISFHTLLHWVSSIESKSSHPMAAALVNHAKLLSIDIKPEKVEEFENFPGEDEEMKQGQTLGYVFCGEMAVGAFGLSDSCRSGAKEAMEQLKSLGIKTAMLTGDCSAAAMHAQQQLENAVDVIHSELLPKEKANMIKEFKRDYGATAMVGDGLNDTPALAIADIGISMGISGSPLATQTGNVILMSNDITKIPQAIKLARKSHAKVVQNVILSITTKIAILGLAIAGHPLVWAAVLADVGTCLLVILNSMLLLRGSDHKHGNKCCKSSKLCSMKHGRCDGSNTRPSHHHHHHDHHHHSHRCHVVDDKSPSRENHVHKHCCEKKDHNLQLPQDHNGDCGDKFHHNHSNNGNCSKKVGEPNCNCHSHHVAIDIHEGVLAKDFDVDGECTLADSIAISIFIIMNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQAAIFSGFASLNDHVEQRIVEFNMQAEQTDRILSKIGEEAAVGLKELESHYYSSTQRTCCLAAIPAALLVLSRPMVSSLSSGGLGGLSEGNLPVP 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3727040 3737148 + CmaCh05G007060.1 Cma05g00706 294824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00706 998 SUPERFAMILY Calcium ATPase, transduction domain A 216 301 IPR008250 -
Cma05g00706 998 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 473 854 - -
Cma05g00706 998 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 7 469 - -
Cma05g00706 998 CDD P-type_ATPase_HM 103 669 - -
Cma05g00706 998 Gene3D - 403 469 IPR023299 GO:0000166
Cma05g00706 998 SUPERFAMILY HAD-like 394 668 IPR036412 -
Cma05g00706 998 Gene3D - 16 89 - -
Cma05g00706 998 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 176 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma05g00706 998 PANTHER BNAA07G36130D PROTEIN 473 854 - -
Cma05g00706 998 SUPERFAMILY HMA, heavy metal-associated domain 17 86 IPR036163 GO:0046872
Cma05g00706 998 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 154 672 - -
Cma05g00706 998 PRINTS P-type cation-transporting ATPase superfamily signature 251 265 - -
Cma05g00706 998 PRINTS P-type cation-transporting ATPase superfamily signature 396 410 - -
Cma05g00706 998 PRINTS P-type cation-transporting ATPase superfamily signature 512 522 - -
Cma05g00706 998 PRINTS P-type cation-transporting ATPase superfamily signature 567 586 - -
Cma05g00706 998 PRINTS P-type cation-transporting ATPase superfamily signature 591 603 - -
Cma05g00706 998 MobiDBLite consensus disorder prediction 702 716 - -
Cma05g00706 998 Pfam E1-E2 ATPase 212 374 - -
Cma05g00706 998 Gene3D - 364 624 IPR023214 -
Cma05g00706 998 ProSiteProfiles Heavy-metal-associated domain profile. 21 87 IPR006121 GO:0046872
Cma05g00706 998 MobiDBLite consensus disorder prediction 698 727 - -
Cma05g00706 998 ProSitePatterns E1-E2 ATPases phosphorylation site. 398 404 IPR018303 -
Cma05g00706 998 Gene3D - 190 305 - -
Cma05g00706 998 PANTHER BNAA07G36130D PROTEIN 7 469 - -
Cma05g00706 998 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 646 IPR023298 -
Cma05g00706 998 Pfam haloacid dehalogenase-like hydrolase 392 581 - -
Cma05g00706 998 Pfam Surfeit locus protein 5 subunit 22 of Mediator complex 845 943 IPR009332 GO:0003712|GO:0006357|GO:0016592
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00706 Cma-Chr5:3727040 Cma07g00030 Cma-Chr7:191702 4.23E-65 dispersed
Cma05g00706 Cma-Chr5:3727040 Cma05g00708 Cma-Chr5:3753976 0 proximal
Cma10g00384 Cma-Chr10:1763343 Cma05g00706 Cma-Chr5:3727040 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00706 K01534 - csv:101203668 1204.12