Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00708 ATGTATATTTTTGCAGGAAACTTAGAGGAAATCTTGTTTGAGAAAGAAGAAGACGATAATAATGAAGTCCCTCTCGTTGAAAACATCCTCAAACCCCTCGAAGGAATCAAACAAATCTCTGTTATTGTCCCAACAAGAACTCTCATTGTCGTTCATGATTCCCTCCTCGTTTCTCAGCTTCAAATCGTGAAAGCACTAAATGAAGCAAGATTGGAGGCAAATGTACAAGTAAATGGAAAGGGAATTAGCAAGAAGAAATGGCCAAGTCCTTTTGCAATAGCCAGTGGGTTGCTTCTAACAGCATCCTTTTTGAAGTATGTCTACCACCCATTGCGGTGGCTGGCCATCGCTGCGGTCGCCGCCGGCATCTTTCCCATTCTCCTAAAAGCCATTTCCGCCGTTCGCCATCTCAGGATCGATGCCAACATTCTTGCCATTGTTGCTGTGGTGGGGACAATTAGTATGAATGACTACATGGAAGCTGGGAGCATAGTGTTTTTGTTTTCCATTGCTGAATGGCTGGAGTCAAGAGCAAGCCACAAGGCCAATGCTGCAATGTCCTCGCTCATGAGCCTGGCCCCTCAAAAGGCCATCATAGCTGAAACTGGAGAGGTTGTGGCGGTAAAAGAGGTGGAATTGAAGAGTGTGTTGGCAGTGAAGGGTGGTGAAGTTATTCCCATTGATGGCATTGTTGTGGATGGAAAATGTGATGTTGATGAGAAAACTTTGACTGGAGAAACTTTCCCAGTTCCCAAACTTAAAGATTCTCTCGTTTGGGCTGGTACCATCAACTTAAATGGTTATATTAGTGTTCAAACCACTGTTGTTGCTGAAGACTGCGTGGTCGCAAAAATGGCTGAGTTTGTAGAAGAAGCTCAAAACAACAAATCAAAAACTCAGAGATTCATTGATGAATGTGCCAAATATTACACTCCAGCTGTCGTTGTCATATCAGCTTGTGTAGCAGCCATTCCAGCTGCATTCAGAGTTCACAATCTCAGCCATTGGTTTCACTTAGCTCTGGTGGTCTTGGTGAGTGCATGTCCCTGTGCCCTTATCCTCTCCACCCCGGTCGCCGCCTTCTGCGCCCTCACGAAGGCCGCCATGGCCGGTGTTCTCATCAAAGGCAGCGACCACCTTGAAGTTCTTGCAAAGATTAAGGTTGTAGCCTTCGACAAGACTGGCACAATCACCAGAGGTGAATTTGTTGTAACAAATTTTCAAGCTCTACGAGATGATATCAACTTCCACACCTTACTTCATTGGGTTTCAAGCATTGAGAGCAAATCAAGCCATCCAATGGCAGCTGCCCTTGTCAACCATGCAAAGCTGCTTTCTATTGATATTAAACCTGAAAAAGTTGAGGAATTTGAGAACTTTCCAGGAGAAGGTGTTCGTGGGAAGATTGATGGGAAGGATATTTACATTGGAAGTACAAAAATTGCTGCCCGAGCTGGCTGCTCGTCAGCTATGAAGTTAGACGAGGAAATGAAACAAGGACAAACCCTTGGATATGTATTTTGTGGGGAGATGGCTGTCGGAGCCTTTGGTCTTTCGGATTCTTGTCGGTCAGGAGCTAAAGAAGCCATGGAGCAGCTCAAGAGTCTTGGCATTAAAACAGCTATGCTCACTGGGGACTGTAGTGCAGCCGCCATGCACGCCCAACAACAGCTGGAGAACGCGGTTGATGTAATCCATTCAGAGCTTCTTCCAAAGGAGAAAGCAAATATGATAAAAGAATTCAAAAGGGATTATGGAGCAACCGCCATGGTTGGCGATGGCTTAAATGATACCCCAGCATTAGCCACAGCTGATATTGGCATATCAATGGGCATTTCTGGTTCACCTCTCGCTACTCAAACTGGGAATGTCATCTTAATGTCAAATGACATCACAAAAATCCCACAAGCCATCAAGCTAGCTAGGAAATCTCATGCAAAAGTTGTTCAAAATGTCATTTTGTCAATCACTACCAAGATTGCAATCCTTGGCTTGGCCATCGCCGGACATCCGCTCGTTTGGGCGGCCGTTCTCGCCGATGTCGGTACCTGCCTATTGGTCATCTTGAACAGCATGCTTCTCTTGAGAGGAAGTGATCATAAACATGGGAACAAATGTTGCAAATCTTCCAAGCTATGCTCGACAAAACATGGACGATGTGATGGTAGTAACACTCGACCGTCTCATCATCATCATCACGGTCATCATCACCATAGTCATCGATGTCATGTCGTTGATGATAAATCGCCTAGTCGAGATAATCACAACAGAGATTGTGGGGATAAATTTCATCACAATGATTCAAATCAATGTGAGAAAAACCCACATGAGAAAGAGAACAATGGGAATTGTTCAACGAAAGTGGACGAACCCAATTGTAATTGCCACTCACATCATCATGTAGCTATTGACATTCATGAAGGTACGGACTGTGAGAGAGTAGAGAAGAAATAA 2454 44.62 MYIFAGNLEEILFEKEEDDNNEVPLVENILKPLEGIKQISVIVPTRTLIVVHDSLLVSQLQIVKALNEARLEANVQVNGKGISKKKWPSPFAIASGLLLTASFLKYVYHPLRWLAIAAVAAGIFPILLKAISAVRHLRIDANILAIVAVVGTISMNDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMSLAPQKAIIAETGEVVAVKEVELKSVLAVKGGEVIPIDGIVVDGKCDVDEKTLTGETFPVPKLKDSLVWAGTINLNGYISVQTTVVAEDCVVAKMAEFVEEAQNNKSKTQRFIDECAKYYTPAVVVISACVAAIPAAFRVHNLSHWFHLALVVLVSACPCALILSTPVAAFCALTKAAMAGVLIKGSDHLEVLAKIKVVAFDKTGTITRGEFVVTNFQALRDDINFHTLLHWVSSIESKSSHPMAAALVNHAKLLSIDIKPEKVEEFENFPGEGVRGKIDGKDIYIGSTKIAARAGCSSAMKLDEEMKQGQTLGYVFCGEMAVGAFGLSDSCRSGAKEAMEQLKSLGIKTAMLTGDCSAAAMHAQQQLENAVDVIHSELLPKEKANMIKEFKRDYGATAMVGDGLNDTPALATADIGISMGISGSPLATQTGNVILMSNDITKIPQAIKLARKSHAKVVQNVILSITTKIAILGLAIAGHPLVWAAVLADVGTCLLVILNSMLLLRGSDHKHGNKCCKSSKLCSTKHGRCDGSNTRPSHHHHHGHHHHSHRCHVVDDKSPSRDNHNRDCGDKFHHNDSNQCEKNPHEKENNGNCSTKVDEPNCNCHSHHHVAIDIHEGTDCERVEKK 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3753976 3757962 - CmaCh05G007080.1 Cma05g00708 294826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00708 817 Gene3D - 382 642 IPR023214 -
Cma05g00708 817 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 142 694 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cma05g00708 817 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 164 668 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma05g00708 817 ProSiteProfiles Heavy-metal-associated domain profile. 26 75 IPR006121 GO:0046872
Cma05g00708 817 SFLD Haloacid Dehalogenase 372 643 - -
Cma05g00708 817 SUPERFAMILY HMA, heavy metal-associated domain 20 74 IPR036163 GO:0046872
Cma05g00708 817 Gene3D - 401 522 IPR023299 GO:0000166
Cma05g00708 817 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 21 711 - -
Cma05g00708 817 Pfam E1-E2 ATPase 200 368 - -
Cma05g00708 817 Gene3D - 178 293 - -
Cma05g00708 817 SUPERFAMILY Calcium ATPase, transduction domain A 204 289 IPR008250 -
Cma05g00708 817 Pfam haloacid dehalogenase-like hydrolase 386 605 - -
Cma05g00708 817 CDD P-type_ATPase_HM 91 693 - -
Cma05g00708 817 MobiDBLite consensus disorder prediction 743 760 - -
Cma05g00708 817 MobiDBLite consensus disorder prediction 728 742 - -
Cma05g00708 817 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Cma05g00708 817 Gene3D - 20 77 - -
Cma05g00708 817 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 21 711 - -
Cma05g00708 817 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 142 696 - -
Cma05g00708 817 MobiDBLite consensus disorder prediction 718 760 - -
Cma05g00708 817 SUPERFAMILY Calcium ATPase, transmembrane domain M 142 669 IPR023298 -
Cma05g00708 817 PRINTS P-type cation-transporting ATPase superfamily signature 615 627 - -
Cma05g00708 817 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Cma05g00708 817 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Cma05g00708 817 PRINTS P-type cation-transporting ATPase superfamily signature 536 546 - -
Cma05g00708 817 PRINTS P-type cation-transporting ATPase superfamily signature 239 253 - -
Cma05g00708 817 SFLD p-type atpase 372 643 IPR044492 -
Cma05g00708 817 SUPERFAMILY HAD-like 388 692 IPR036412 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00708 Cma10g00384 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00493 Cma-Chr2:2627161 Cma05g00708 Cma-Chr5:3753976 1.82E-56 dispersed
Cma05g00708 Cma-Chr5:3753976 Cma10g00384 Cma-Chr10:1763343 0 dispersed
Cma09g00366 Cma-Chr9:1514178 Cma05g00708 Cma-Chr5:3753976 2.20E-61 dispersed
Cma05g00706 Cma-Chr5:3727040 Cma05g00708 Cma-Chr5:3753976 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00708 K01534 - csv:101203668 1228.77