Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00719 ATGGAGAACATTCTCGACGAGTATCAGTACTACTGGGAAACGAACATGTTTCTACAGACGGAAGAGTTCGACAGTTGGGGAGTGGACGAAGCGTTTTACGGTTCTTACGATTCAAGCTCGCCGGACGGAACGCCGTCGTCGTTAGAGGCGTCGAAGAACATCTTGTCGGAGAGGAATCGGAGGAAGAAGCTGAACGATAGGCTTCTGGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAGAAGAGAATCGAAGAGGAGATCTCAGATCTGGAATCAGGCAAAATCAAGAACAGAGCAACAAACGAAGATGACGACGGAATCTTGAGGGAGAAGAGAACGAATAAGAATGGGCAAGTACCGGAGCCGCCGCCGTCTTTCCCGATCGAAGTTCTCGACTTGAGGGTGAATTGCATGGGAGAGAAGACGATGGTGGTGAGCTTGACGTGCGGAAGAAGAAGCGACACCATAATGAAAATATGCCAAGTTATTGAATCGCTTAAGATGAAGATTATTACGGCCACTATCACCATTGTTGCCAACAAGCTTTTGATCACGCTCTTCCTTGAGGAGGAGATAGCGGAGGAAGAGGAAGTAAAGGTAAAAATAGAAGCAGCAATTGCAGCAATTAGTGACCCACAAAAGCCTATATGA 714 47.34 MENILDEYQYYWETNMFLQTEEFDSWGVDEAFYGSYDSSSPDGTPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIEEEISDLESGKIKNRATNEDDDGILREKRTNKNGQVPEPPPSFPIEVLDLRVNCMGEKTMVVSLTCGRRSDTIMKICQVIESLKMKIITATITIVANKLLITLFLEEEIAEEEEVKVKIEAAIAAISDPQKPI 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3861355 3863985 + CmaCh05G007190.1 Cma05g00719 294837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00719 237 MobiDBLite consensus disorder prediction 115 145 - -
Cma05g00719 237 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 233 - -
Cma05g00719 237 MobiDBLite consensus disorder prediction 115 137 - -
Cma05g00719 237 PANTHER TRANSCRIPTION FACTOR BHLH35 1 233 - -
Cma05g00719 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 111 IPR036638 GO:0046983
Cma05g00719 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cma05g00719 237 Coils Coil 87 114 - -
Cma05g00719 237 SMART finulus 54 103 IPR011598 GO:0046983
Cma05g00719 237 Gene3D - 46 114 IPR036638 GO:0046983
Cma05g00719 237 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00719 Cma10g00372 CCT
Cma05g00719 Cma11g00359 CCT
Cma05g00719 Cma12g00915 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00719 Cma-Chr5:3861355 Cma20g00525 Cma-Chr20:2531997 8.96E-21 dispersed
Cma10g00372 Cma-Chr10:1713555 Cma05g00719 Cma-Chr5:3861355 5.98E-76 wgd
Cma11g00359 Cma-Chr11:1786261 Cma05g00719 Cma-Chr5:3861355 1.48E-70 wgd
Cma12g00915 Cma-Chr12:7027138 Cma05g00719 Cma-Chr5:3861355 5.86E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35077 PF00010 HLH 7.00E-11 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00719 - - cmo:103492501 330.102