Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00724 ATGAGTTCCTTCAAGCCCTCTCCCTACGCCAGACGGAGTGATGTGGAGTCCGGCAACTGCAATTCCGACGACCCCGAGGAGGACGACTCATCTAATCCTTTTGAGATTCATACCACTAAGCATGCTTCTGTTGACAGACTCCGCCGCTGGAGACAAGCTGCACTAGTGTTAAATGCTTCTCGTCGATTTCGGTATACCTTAGACTTGAAAAAGGAAGAAGAGAAGAAAGAAGCTTTGAGAAAGATTAGAGCACATGCACAAGCCATACGAGCTGCATATCTCTTTAAAGAGGCTGGGAATCGTCTATCAGGTCCTAGGCCTACAGCATCTGCAGCTCCAAATGGTGATTTTTCTGTTGGGCAAGATCAACTGGCTGTGTTGGTAAAGGATCGAAATGTTGGCACTCTGGAGCAGTATGGAGGGGTTAAAGGGGTAGCAGATATGTTGCAATCAAACTTAGAGAAGGGGATAGTTGGTGATGATTCTGATTTACTGAAACGGAGAAACACATATGGTTCAAACACGTATCCTCAGAAACCGGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACGTTGATCATATTGATGATAGCTGCTGTTGCTTCGTTAGTGCTAGGCATAAAGACTGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTTATTCTTGTCATTGTTGTAACAGCTATTAGTGACTATCGGCAATCTCTTCAATTTCAGAATTTGAATAAGGAGAAGAGGAACATACAAGTGGAGGTTGTTAGAGGTGGTCGTCGAATTGAGGTCTCAATTTATGACATTGTTGTTGGTGATGTTATACCACTCAATATTGGTGATCAGGTCCCTGCTGATGGCATCTTAATTTCTGGACACTCACTTGCCATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTTCAAAAGCATGGTAAGGAACCTTTTCTGATGTCTGGATGCAAAGTAGCTGATGGTAGTGGCAGCATGCTGGTTACAAGTGTTGGAGTTAATACTGAATGGGGTTTGCTTATGGCAAGTATTTCTGAAGACAATGGCGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGTGTGGCAACTTTAATTGGTATTGTTGGACTCACAGTAGCCCTTGCTGTTTTGATTGTGCTCCTCACAAGGTATTTCACTGGTCACACCAAAAATCCAGATGGAAGTCGTCAGTTTATTGCAGGCCAGACAAAAGTTGGCCGTGCCGTAGATGGAGCCATCAAAATTGTCACTATTGCGGTGACCATTGTTGTGGTTGCTGTGCCCGAAGGGCTTCCACTAGCTGTTACCTTAACTCTTGCTTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTATCAGCATGTGAGACGATGGGGTCTGCTACGACTATTTGTAGTGATAAGACTGGAACCTTAACTTTAAATCAGATGACCATTGTTGAGGCTTATGTTGGAGGGAAGAAGATTGATCCGCCAGAGAAGAAGTCAGAGTTGTCTCCCATGATACACTCCATACTTGTTGAAGGCATTGCTCTAAACTCAAATGGTAGTGTATATGTACCTGAGAGTGGTGGAGAGGTAGAGGTTACAGGTTCACCTACAGAAAAGGCTATTCTTAATTGGGGTATCAAGCTGGGAATGAACTTTCAAGCACTTAGATCAGAATCTGCAATTCTTCATGTTTTCCCCTTCAGTTCAGACAAAAAACGTGGTGGTGTTGCAGGTCAACGGGATAATCAAGTTCATATACACTGGAAAGGTGCTGCTGAGATAGTCTTGGCATCATGCACACGGTTTATTGAACATGATCACTCTGTCCAACTAGATGAAGATAAGATGAAGTATTTTAAGAGAGCTATTGAGGATATGGCTTCACGTAGTTTACGTTGTGTTGCAATTGCATATAGATCTTTTGAACCTGAGAATGTTCCTGATGGTGAAGAACAATTGAGTAAGTGGGCTCTACCAGAAGATGACCTTGCTTTGTTGGCTATAGTTGGTTTAAAGGACCCCTGTCGACCAGGAGTAAAGGATGCAGTACGACTTTGTCAAAAGGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTGCAAACTGCTAGAGCTATTGCGTTGGAATGTGGAATACTTGGTTCAGATTCAGATGCTACTGAACCAAATCTTATTGAAGGAAAAGTATTCCGTGCCTTATCTGATGCCCAAAGAGAAGAGGTCGCTGAGAAAATATCAGTGATGGGTCGATCCTCTCCCAATGATAAGCTTCTCCTTGTGCAAGCGTTGAGAAAGAGAGGACATGTAGTTGCTGTAACTGGAGATGGTACAAATGATGCTCCTGCATTACACGAGGCAGATATTGGTCTTGCAATGGGCATTCAGGGGACAGAAGTTGCCAAAGAAAGCTCAGATATTATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTACGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTTCAGCTTACGGTTAATGTTGCAGCACTTATTATCAATGTGGTGGCAGCAATATCCTCCGGTGATGTCCCACTAAATGCTGTGCAGCTTTTGTGGGTTAATCTTATTATGGACACTCTTGGAGCATTAGCGTTGGCTACTGAACCACCAACCAATCACCTCATGGACAGGTCACCAGTTGGTAGAAGAGAACCTCTTATAACAAATATCATGTGGAGGAATCTGCTAATACAGGCATTTTATCAAGTCTCTGTATTGCTTGTCCTCAATTTTCGTGGTCGGAGTTTGCTTCATTTGAACCACTCCAATATAGAAGCTGTCAAAGTGAAGAATACGTTGATTTTCAATGCATTTGTGCTTTGTCAAATTTTCAACGAGTTTAATGCTCGAAAACCTGATGAGAAGAATATATTCAAAGGAGTCACTAAAAATTACCTCTTTATTGGGATCATTGCAATTACTGTTGTGCTCCAGGTGATAATAATCGAGTTTCTTGGAAAATTCACATCCACGGTCAGGCTAAATTGGAAATATTGGATTATTTCAATAATCATTGGTGTTATCAGTTGGCCTCTAGCCCTCCTTGGAAAATTTATACCTGTTCCTGAAACGCCCTTCCATGTGCTGATTATCAGAATGTTCCGTAAACGACAACCTAGAGTTATTCGTCCATATGAATACTTCTAA 3237 42.6 MSSFKPSPYARRSDVESGNCNSDDPEEDDSSNPFEIHTTKHASVDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKEALRKIRAHAQAIRAAYLFKEAGNRLSGPRPTASAAPNGDFSVGQDQLAVLVKDRNVGTLEQYGGVKGVADMLQSNLEKGIVGDDSDLLKRRNTYGSNTYPQKPGRSFWRFLWEAWQDLTLIILMIAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVVRGGRRIEVSIYDIVVGDVIPLNIGDQVPADGILISGHSLAIDESSMTGESKIVQKHGKEPFLMSGCKVADGSGSMLVTSVGVNTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVALAVLIVLLTRYFTGHTKNPDGSRQFIAGQTKVGRAVDGAIKIVTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYVGGKKIDPPEKKSELSPMIHSILVEGIALNSNGSVYVPESGGEVEVTGSPTEKAILNWGIKLGMNFQALRSESAILHVFPFSSDKKRGGVAGQRDNQVHIHWKGAAEIVLASCTRFIEHDHSVQLDEDKMKYFKRAIEDMASRSLRCVAIAYRSFEPENVPDGEEQLSKWALPEDDLALLAIVGLKDPCRPGVKDAVRLCQKAGVKVRMVTGDNVQTARAIALECGILGSDSDATEPNLIEGKVFRALSDAQREEVAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMDRSPVGRREPLITNIMWRNLLIQAFYQVSVLLVLNFRGRSLLHLNHSNIEAVKVKNTLIFNAFVLCQIFNEFNARKPDEKNIFKGVTKNYLFIGIIAITVVLQVIIIEFLGKFTSTVRLNWKYWIISIIIGVISWPLALLGKFIPVPETPFHVLIIRMFRKRQPRVIRPYEYF 1078
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4038867 4064861 + CmaCh05G007240.1 Cma05g00724 294842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00724 1078 Coils Coil 69 89 - -
Cma05g00724 1078 SFLD Haloacid Dehalogenase 464 840 - -
Cma05g00724 1078 PRINTS P-type cation-transporting ATPase superfamily signature 681 692 - -
Cma05g00724 1078 PRINTS P-type cation-transporting ATPase superfamily signature 812 824 - -
Cma05g00724 1078 PRINTS P-type cation-transporting ATPase superfamily signature 703 713 - -
Cma05g00724 1078 PRINTS P-type cation-transporting ATPase superfamily signature 482 496 - -
Cma05g00724 1078 PRINTS P-type cation-transporting ATPase superfamily signature 306 320 - -
Cma05g00724 1078 PRINTS P-type cation-transporting ATPase superfamily signature 788 807 - -
Cma05g00724 1078 Pfam Ca2+-ATPase N terminal autoinhibitory domain 32 74 IPR024750 GO:0005516
Cma05g00724 1078 Gene3D - 164 358 - -
Cma05g00724 1078 Gene3D - 42 98 - -
Cma05g00724 1078 SUPERFAMILY HAD-like 480 893 IPR036412 -
Cma05g00724 1078 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 133 1051 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cma05g00724 1078 Gene3D - 190 1040 - -
Cma05g00724 1078 PANTHER CATION TRANSPORTING ATPASE 22 1063 - -
Cma05g00724 1078 MobiDBLite consensus disorder prediction 1 36 - -
Cma05g00724 1078 Pfam haloacid dehalogenase-like hydrolase 479 802 - -
Cma05g00724 1078 SMART Cation_ATPase_N_a_2 138 212 IPR004014 -
Cma05g00724 1078 Gene3D - 492 688 IPR023299 GO:0000166
Cma05g00724 1078 Pfam Cation transporter/ATPase, N-terminus 139 207 IPR004014 -
Cma05g00724 1078 SFLD p-type atpase 464 840 IPR044492 -
Cma05g00724 1078 Gene3D - 479 833 IPR023214 -
Cma05g00724 1078 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 1051 IPR023298 -
Cma05g00724 1078 PANTHER CALCIUM-TRANSPORTING ATPASE 22 1063 - -
Cma05g00724 1078 PRINTS Sodium/potassium-transporting ATPase signature 225 245 - -
Cma05g00724 1078 PRINTS Sodium/potassium-transporting ATPase signature 475 496 - -
Cma05g00724 1078 PRINTS Sodium/potassium-transporting ATPase signature 600 618 - -
Cma05g00724 1078 Pfam Cation transporting ATPase, C-terminus 873 1049 IPR006068 -
Cma05g00724 1078 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 489 685 IPR023299 GO:0000166
Cma05g00724 1078 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 755 868 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma05g00724 1078 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 227 399 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma05g00724 1078 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 422 505 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma05g00724 1078 CDD P-type_ATPase_Ca_PMCA-like 164 921 - -
Cma05g00724 1078 Pfam E1-E2 ATPase 259 460 - -
Cma05g00724 1078 ProSitePatterns E1-E2 ATPases phosphorylation site. 484 490 IPR018303 -
Cma05g00724 1078 SUPERFAMILY Calcium ATPase, transduction domain A 259 355 IPR008250 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00724 Cma12g00923 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00724 Cma-Chr5:4038867 Cma12g01119 Cma-Chr12:8851127 0 dispersed
Cma13g00147 Cma-Chr13:1081823 Cma05g00724 Cma-Chr5:4038867 1.99E-109 dispersed
Cma08g00846 Cma-Chr8:5121305 Cma05g00724 Cma-Chr5:4038867 0 transposed
Cma19g00865 Cma-Chr19:8056131 Cma05g00724 Cma-Chr5:4038867 1.24E-101 transposed
Cma08g00318 Cma-Chr8:1808084 Cma05g00724 Cma-Chr5:4038867 0 transposed
Cma12g00923 Cma-Chr12:7124315 Cma05g00724 Cma-Chr5:4038867 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00724 K01537 - csv:101211703 1904.41