Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00728 ATGAAGACGCCGGCGAATGGTGCCGCCGCCGTGCCTAATTCTAGCGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGCGAACCTACCACCGGCCGGTTACCACGTAGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCCTTGAAGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCCAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCCGACCCGGAAACGGATGAAGTATATGCACAAATGACACTATTACCGGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTGAAATCTAATAAGCCTCAGCCAGAGTTCTTCTGTAAAACGTTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCTATGCAACCACCTGCACAAGAGCTTGTTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGACAACCAAAACGCCATTTACTAACAACTGGTTGGAGCTTGTTTGTTAGTGGAAAGAGACTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAGCAACAGCTTCTATTGGGCATCAGGCGAGCAAACAGGCAACCAACCAACTTATCATCATCAGTGTTGTCAACTGATAGTATGCATATTGGTATTCTTGCAGCAGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTTGTTCCTCTTGCCAAATATTACAAGGCAGTGTCTGCTAACCAAATATCACTCGGTATGCGCTTCAGAATGATGTTTGAGACAGAAGAGTCTGGAACTAGAAGGTATATGGGTACTATCACAGGTATAAGTGATCTTGATTCTGTCAGATGGAAGGGCTCACAATGGCGTAATCTACAGGTCGGGTGGGACGAGTCAACTGGAGGAGAACGACGAAATCGAGTCTCGATATGGGAGATCGAGCCAGTTATTGCTCCATTTTTCATTTGCCCCCCTCCTTTTTTGAGATCAAAACGTCCGAGGCAACCAGGAATGCCAGATGATGACTCCTCCGATTTAGATGGTATATGTAAAAGAACAATGTTTGGGGACGATTTTTGCATGAAAGATCCACAGGGATATCCAGGCCTAAACTTAGTTCAATGGATGAATATGCAAAACCCTTCACTTTCTAATGCAATGCAGCCAAGTTACATGCATTCATTTTCGGGGTCTATGCTTCCGAACCTTGGCGGAGTCGATATTTCTCGACAACTTGGCTTGTCGAACACACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTTCTTTCTCAAGCTCAGCAGTTGGATCAGCTACCTAAACTACCGTCAAGTATGAACTCATTGGGGTCTGTTGTGCAGCCATCTCAGCAGTTGGATGATATGTCTCAGCAGACCCGTCCGAATTTGATTAACCAAAACGCGGTCTCGAGTCAGATTCAAGCTCAAATAATGCAGCAGCAGCAACCTCACACTAATGGGATCGTACTGCAGCAAAACCAGCAGCTTCAGAGAAGCCTCCCTCAGAATCAACCACAGACTATGAATCAGTCCTCGCTCCCGGAACCGATGATCCATCATTTGCAAATGTCGGATAATCAGGTTCCGATGCAGATGTTGCAGAAGCTTCAGCAGCAGCAGCAGCAATCACTTTTGGCTCAGCAGTCTGTTGTTCTTCAGCCTTCTCAACTACCGGAACAGTTGAGACAGTCGGTGGATGCGTCGTTTTCCCGGTCCATGTCGTCTAACCAAATGCTCGACATTCCTCAATCCACCCCAGCTGCAGTCCCTCCATCAAACGTGTCACCACAGCAGGCAGCGAAGAGCAATGGCACGACAAATAATCGTTTCTCAAATCAGCATTTGCAACCGAAACTTCCACAACTACATCAACCACCTCCATCTACTGTACTTTCTGATATGTCTAGACCAGTAGGACTCCCTCCTACTCAAACATACAATCAGCTCTCTGCAGCTACTAGCAGCGTAATAACCGGAGCAGCAGCGGCTGGCCAATCTGGAATCACTGATGACATACCATCTTGCTCCACGTCACCGTCCACGAACAACGGCCCGAGTTTGATTCAGCCAGTAAACAATGGAAGGGTTCATCGAAGCACGGGATTGGTTGAGGATGTTGCTCAATCTTCTGCTACAATATTCAGTACAAATACCTTGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGCGATTTTCGCACAACAAACGTTCTTGAGTGGCGTCGTTTCGCAGACCGATTTCTTGGACACGTCTTCCTCAACGACCTCGGCTTGCCTTTCACAGAACGAGGCTCAGTTGCAGCAGAATAACGTGATGTCTTTCAACTCACAGCCAATGTTGTTTAGAGATAGTACTCAGGATTTGGAAGTACCAACCGATCTCCATAACATTCCGTATGGGACGAATGTCGATGGACCATTGGTAACGCAGTTAAACTCCGATCCTTTGTTAAACAAAGGCATTGGAGAGTTAGGGAAGGACTTCTCCAATAACTTTTCTTCTGGGGCTATGCTCACCACGTATGATGCACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAGTCATTCGGTATTCCAGACATGACGTTTAATTCTATGGATTCAGCGATGAACGATAACGCGTTCTTGAATCGAAACCAATGGGCTCCTCCGCCTCCGTTCCAGCGTATGCGAACCTACACGAAGGTTTACAAACGTGGAGCTGTTGGGAGATCAATTGATATCACCAGTTACACAGGTTACGACGAGCTTAAACAAGACCTTGCCCGTCGGTTCGGCATCGAGGGACAATTAGAGGACAGGCAAAAAATAGGCTGGAAACTCGTTTACGTCGATCATGAAAACGACGTTTTACTTGTAGGCGACGACCCGTGGGAGGACTTCGTGAACTGCGTACGGAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGCGATTTCGGGAACGGTGTCCTACTGAACCAAGCCTGCAGTAGCTCAGATGCTCAAAGTTGGTTCATAGCTCAGCAAGGCTATGATTTCCCAGCAATGGCGGAGATATATATAGCCAGCCCCAACACTCAGCAATGGGCTTTAGCCATTGTCTGGTTTCGAGTTGTCGTGTCGATATTATTTGCCAATGTGATTATAGTTTATGATATCGTCGCCATTGTTGTCACCGAGGTTGATATCATTTGCCACGCCATATTGTTATATTATTGTGATGATGCAGTTTAG 3429 46.34 MKTPANGAAAVPNSSEGGLEKKIINPELWQACAGPLANLPPAGYHVVYFPQGHSEQVAASLKKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSTDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGICKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNAMQPSYMHSFSGSMLPNLGGVDISRQLGLSNTQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQPSQQLDDMSQQTRPNLINQNAVSSQIQAQIMQQQQPHTNGIVLQQNQQLQRSLPQNQPQTMNQSSLPEPMIHHLQMSDNQVPMQMLQKLQQQQQQSLLAQQSVVLQPSQLPEQLRQSVDASFSRSMSSNQMLDIPQSTPAAVPPSNVSPQQAAKSNGTTNNRFSNQHLQPKLPQLHQPPPSTVLSDMSRPVGLPPTQTYNQLSAATSSVITGAAAAGQSGITDDIPSCSTSPSTNNGPSLIQPVNNGRVHRSTGLVEDVAQSSATIFSTNTLTAVKPSLNISKNQSHAIFAQQTFLSGVVSQTDFLDTSSSTTSACLSQNEAQLQQNNVMSFNSQPMLFRDSTQDLEVPTDLHNIPYGTNVDGPLVTQLNSDPLLNKGIGELGKDFSNNFSSGAMLTTYDAQKDPQQEISSSIVSQSFGIPDMTFNSMDSAMNDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITSYTGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLLNQACSSSDAQSWFIAQQGYDFPAMAEIYIASPNTQQWALAIVWFRVVVSILFANVIIVYDIVAIVVTEVDIICHAILLYYCDDAV 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4096173 4104401 + CmaCh05G007280.1 Cma05g00728 294846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00728 1142 CDD B3_DNA 130 222 IPR003340 GO:0003677
Cma05g00728 1142 Pfam AUX/IAA family 954 1042 IPR033389 -
Cma05g00728 1142 MobiDBLite consensus disorder prediction 619 694 - -
Cma05g00728 1142 Gene3D - 129 232 IPR015300 -
Cma05g00728 1142 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1064 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma05g00728 1142 Gene3D - 295 365 - -
Cma05g00728 1142 Gene3D - 953 1046 - -
Cma05g00728 1142 SUPERFAMILY DNA-binding pseudobarrel domain 120 260 IPR015300 -
Cma05g00728 1142 MobiDBLite consensus disorder prediction 619 688 - -
Cma05g00728 1142 Pfam Auxin response factor 257 340 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma05g00728 1142 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Cma05g00728 1142 SMART B3_2 131 233 IPR003340 GO:0003677
Cma05g00728 1142 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Cma05g00728 1142 PANTHER AUXIN RESPONSE FACTOR 1 1064 - -
Cma05g00728 1142 SUPERFAMILY CAD & PB1 domains 969 1036 - -
Cma05g00728 1142 ProSiteProfiles PB1 domain profile. 957 1042 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01959 Cma-Chr1:12653796 Cma05g00728 Cma-Chr5:4096173 8.89E-35 dispersed
Cma05g00728 Cma-Chr5:4096173 Cma13g00511 Cma-Chr13:5418480 8.67E-27 dispersed
Cma09g00118 Cma-Chr9:517496 Cma05g00728 Cma-Chr5:4096173 6.72E-36 dispersed
Cma05g01434 Cma-Chr5:10586898 Cma05g00728 Cma-Chr5:4096173 3.95E-61 transposed
Cma12g01336 Cma-Chr12:10158039 Cma05g00728 Cma-Chr5:4096173 0 transposed
Cma12g00930 Cma-Chr12:7210503 Cma05g00728 Cma-Chr5:4096173 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35078 PF02309 AUX_IAA 2.00E-07 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00728 - - csv:101205542 1826.6