Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00730 ATGGAAGAATCTCCCACACTTGGAAAGCGGAAAGAACTTGAAGAAGAATCAGCTGTCGTAGAAACTGGCAACAACCAAGAAACGAACTCCAATAAGCGACCTAAAGAATCGAAAAACCTAGAAGATGTGAAGGCAACTCCGACTCAGGAAACTGTCTCCAACCGACGCAGTTTGACGCGGACTTGTGTTCATGAAGTTGCGGTCCCGGCTGGGTACACTTCTACCAAGGACGAGTCGCTTCATGGAACCCTATCGAATCCGGTTTTCAATGGTACAATGGCGAAAACGTACCCGTTTACACTCGACCCGTTTCAGCAGGTATCGGTTTCTTGCTTAGAACGGAATGAATCTATTTTGGTTTCTGCTCATACTTCAGCTGGAAAAACTGCGGTTGCTGAATATGCCATTGCTATGGCTTTTAGAGATAAGCAGAGGGTTATATATACTTCTCCACTCAAGGCTTTGAGTAATCAGAAGTATAGGGAATTGAGTCAAGAGTTTAAAGACGTGGGACTGATGACTGGGGATGTGACTCTTTCGCCTAATGCTAGTTGTTTAGTTATGACGACGGAGATACTTAGGGGGATGCTTTACAGGGGTTCGGAAGTTTTGAAGGAAGTAGCATGGGTAATTTTTGATGAAATTCACTATATGAGAGATCGGGAAAGAGGTGTTGTTTGGGAAGAGAGTATAATATTTTTACCACCGGCTATCAAAATGGTCTTCCTTTCTGCAACAATGTCCAATGCCACGGAGTTTGCTGAGTGGATATGTAATATACACAAGCAGCCTTGTCATGTGGTGTACACTGATTTTCGACCAACTCCCTTGCAACATTATGTTTTTCCCGTGGGTGGCAATGGGTTGTATCTCGTGGTTGATGAAGACGAACAGTTCAGGGAGGATAATTTTATGAAGCTGCTGGACACATTTGCTAAACAAAAACAGATTGCTGGCCACAGGACTTTAAATGGGAAATCTAGTGGGAGAATAGCTAAAGGTGGCAGTGGTTCCGGAGGTTCGGACATTTATAAAATTGTTAAGATGATTATGGAACGGAATTTCCAACCAGTTATTGTCTTCAGTTTCAGTAGAAGAGAATGTGAACAACATGCAATGTCCATGTCCAAACTTGACTTTAACACTGATGAAGAAAAGGACACGGTGGAACATGTTTTCAGAAATGCGATTCTCTGCTTGAATGAGGAAGACAGAGAGCTACCTGCAATTGAGCTAATGTTACCTCTTCTCCAGAGAGGAATTGCTGTTCATCATTCTGGGCTTCTTCCTGTAATTAAAGAATTAGTAGAGCTCCTTTTCCAGGAAGGTCTTGTTAAGGCCCTTTTTGCCACAGAAACTTTTGCCATGGGTTTGAACATGCCAGCAAAAACAGTTGTCTTCACTGCCTTTAAAAAGTGGGATGGTGATAGTCACCGATTTATTGGATCTGGTGAGTACATTCAGATGAGTGGAAGGGCTGGACGTCGTGGAAAAGATGACAGGGGTATATGCATTATAATGATTGATGAGCAGGTGGAGATGGGAACAATTAAAGATATGATTTTGGGCAAACCCGCTCCTCTTGTTAGTACTTTTAGACTGAGCTACTACTCAATTTTAAATTTAATGAGCCGGGCTGAAGGCCAATTTACAGCTGAGCATGTTATTAGACACTCATTTCATCAGTTTCAGCACGAGAAGGCATTGCCTGATATTGGGAAAAGAGTGTCGAAGTTAGAGGAGGAAGCTGCCACACTTGATGCTTCAGGAGAGGCTGAAGTTGCTGAATACCACAAGTTAAAGCTTGATATAGCACAACTTGAGAAGAAGATGATGTCTGAAATAACAAGGCCGGAAAGAGTTCTCTATTTTCTTCTTCCTGGTCGGTTGGTTAAGGTAAGAGAAGGGGGGACAGACTGGGGTTGGGGAGTTGTAGTTAACGTTGTTAAAAAGCCCTCAGCTGGGTTAGGCATCTTGCCTTCACGTGGTGGTGCTTATATAGTGGATACCTTACTCCAATGCTCTCCTTGTCTAAGCGAGAATAGTTCACGACCAAAACCTTGTCCACCCCGTCCTGGAGAAAAGGGTGAAATGCACGTGGTTCCAGTTCAGCTGCCTCTTATTTCAGCCTTGAGCAAACTCAGAATCTCTATTCCTTCTGATCTCAGACCCGTGGAAGCAAGGGAAAGCATACTGCTTGCATTGGAAGAACTGGGAACTCGTTTTCCACAGGGTTTTCCAAAATTGAATCCAGTTAAGGACATGAGTATTGAAGATCCAGAAATTGTTGAGTTGGTGAAGCAGATTGAGGAACTTGAGCGGAAATTATATGCTCATCCTCTGCATAAGTCACATGAAGTGGACCAGATTAAATGTTTTCAGAGGAAAGCGGAGGTTAATCATGAAATTCAAATATTAAAGACCAAAATGCGCGATTCCCAGCTTCAAAAATTTCGTGATGAACTGAAGAACCGTTCTCGGGTCCTGAAAAAGCTTGGTCACATTGATGCAGATGGTGTAGTTCAGTTGAAGGGGCGTGCAGCCTGCTTGATTGACACAGGGGATGAGCTCCTTGTTACTGAATTAATGTTTAATGGAACATTCAATGACCTAGATCATCACCAGATTGCATCCCTTGCAAGTTGTTTTATACCAGGAGACAAGTCCAATGAGCAGATTCAGTTAAGAACCGAGCTTGCTAGACCATTACAGCAACTCCAAGATAGTGCGAGAAGAATAGCTGAGATACAACATGAATGCAAATTGGAGATAAATGTGGAAGAATATGTGGAATCAACTGTAAGGCCGTATTTGATGGATGTCATTTACTGTTGGTCAAAGGGAGCGAGTTTTTCAGAGGTGATTCAAATGACAGATGTTTTCGAGGGTAGTATCATTCGAAGTGCTAGAAGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAACCTTAGAGAGTAAGTTTTCTGCGGCCAGTGACAGCCTCCGCAGAGGTATAATGTTTGCAAACTCACTCTATCTGTAG 3045 43.05 MEESPTLGKRKELEEESAVVETGNNQETNSNKRPKESKNLEDVKATPTQETVSNRRSLTRTCVHEVAVPAGYTSTKDESLHGTLSNPVFNGTMAKTYPFTLDPFQQVSVSCLERNESILVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMRDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVFPVGGNGLYLVVDEDEQFREDNFMKLLDTFAKQKQIAGHRTLNGKSSGRIAKGGSGSGGSDIYKIVKMIMERNFQPVIVFSFSRRECEQHAMSMSKLDFNTDEEKDTVEHVFRNAILCLNEEDRELPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAFKKWDGDSHRFIGSGEYIQMSGRAGRRGKDDRGICIIMIDEQVEMGTIKDMILGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIRHSFHQFQHEKALPDIGKRVSKLEEEAATLDASGEAEVAEYHKLKLDIAQLEKKMMSEITRPERVLYFLLPGRLVKVREGGTDWGWGVVVNVVKKPSAGLGILPSRGGAYIVDTLLQCSPCLSENSSRPKPCPPRPGEKGEMHVVPVQLPLISALSKLRISIPSDLRPVEARESILLALEELGTRFPQGFPKLNPVKDMSIEDPEIVELVKQIEELERKLYAHPLHKSHEVDQIKCFQRKAEVNHEIQILKTKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQIASLASCFIPGDKSNEQIQLRTELARPLQQLQDSARRIAEIQHECKLEINVEEYVESTVRPYLMDVIYCWSKGASFSEVIQMTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4105532 4119713 + CmaCh05G007300.1 Cma05g00730 294848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00730 1014 CDD KOW_Mtr4 624 750 - -
Cma05g00730 1014 SMART ultradead3 97 280 IPR014001 -
Cma05g00730 1014 Pfam rRNA-processing arch domain 553 812 IPR025696 -
Cma05g00730 1014 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 543 IPR001650 -
Cma05g00730 1014 SMART DSHCT_2 836 1014 IPR012961 -
Cma05g00730 1014 Pfam DEAD/DEAH box helicase 103 249 IPR011545 GO:0003676|GO:0005524
Cma05g00730 1014 Gene3D - 626 745 - -
Cma05g00730 1014 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 265 IPR014001 -
Cma05g00730 1014 Gene3D - 61 273 IPR027417 -
Cma05g00730 1014 MobiDBLite consensus disorder prediction 1 55 - -
Cma05g00730 1014 MobiDBLite consensus disorder prediction 1 18 - -
Cma05g00730 1014 CDD SF2_C_Ski2 273 509 - -
Cma05g00730 1014 SMART helicmild6 408 497 IPR001650 -
Cma05g00730 1014 PIRSF SKI2 2 1014 IPR016438 GO:0003723|GO:0003724|GO:0006401
Cma05g00730 1014 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 511 IPR027417 -
Cma05g00730 1014 Gene3D - 791 1014 - -
Cma05g00730 1014 PANTHER DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED 29 1014 - -
Cma05g00730 1014 Gene3D - 274 529 IPR027417 -
Cma05g00730 1014 CDD DEXHc_Mtr4-like 62 273 - -
Cma05g00730 1014 Pfam Helicase conserved C-terminal domain 395 497 IPR001650 -
Cma05g00730 1014 Pfam DSHCT (NUC185) domain 839 1009 IPR012961 -
Cma05g00730 1014 PANTHER DEAD/DEAH BOX HELICASE FAMILY PROTEIN, EXPRESSED 29 1014 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00730 K12598 MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1 [EC:3.6.4.13] - csv:101205306 1884.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00730 Cma-Chr5:4105532 Cma17g00475 Cma-Chr17:2894320 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g343 . . . . Bpe02g01197 . . . Cmo05g00632 . . Cma05g00730 . . . . . Bhi04g00821 . . . . . . . . . . . . . . . Cone17ag1106 . . . . Cme03g01725 . Blo18g00068 . . . . Bma01g01331 . . . . . . . Car05g00549 Cpe11g00651 . . . . . . . . Cla08g01238 Cam08g1696 Cec08g1275 Cco08g1396 Clacu08g1393 . Cre08g1178 Lsi08g01101 . Chy03g01230 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010978 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00730 Cma_Chr05 FPKM 11.800355 13.200596 11.2068 11.907822 17.312281 17.613478 19.199482 15.221912 13.386497 15.213853