Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00733 ATGGCGAGAGGCGGAGCTCAGAAGAAAGAGATGGTGGTGGCGATCGACAAAGACAAAGGCAGCCAACAGGCTTTGAAATGGACAATCGATCGCCTTCTGAGCAGAGGCCAAGTCGTTACTCTGCTTCACGTTAAACACAAATCCTCTTCCGCCGCGAATGCGACGACGAATCTCAATGCCGATTTCGATCACGGCGAGACCGCTTTGTACAAACATCATCACATCGACAATCATATCAGCGATCAGTTCTTCCTTCCTTTTCGTTGCATTTGCACAAGTAGCAATATAACATGCAATGAGGTGATGATAGAGGGATCAGACATTCCAAAGACATTAACAAATTACGTCTCCAAAAACGTTGTAGACATTTTAGTAATGGGAGCACCTACAAGATCAGCAGCACAAATTTACAAGAGATTCAAATCAGATGTGCCAAGCAGTGTATCAAAAGGAGCACCAGATTTCTGCACAGTTTACACCATCGGCCACAGAGGGAAAGTTTCGGTGAGGCAGCCCACAGTTCCAATGCCGGCAAGGCCGATTGCTCCGCCGCGCAACCAGTCGCTGCGTGCCTCGCCGCGCCCTCAACTGCTGCATCAACGCACTAATGTCTCCCAACTTCTGGCTGAGCCCAACCAACTATGGTCCAAATCATCTAGACGTTTAGAGACTCAAAGTAGTATGAGGGTTCCTCATGCCCTTCAACAATATTTGGACTTCAAGTCGCCGTTCACAAGGCAGGGTTCAAGGGCTCCAGTGAGCAAAAGGGTGGACCCATCGACGGTGGATTCCGACAATTCGTTTGTCAGCTGCGGCAGGCGGAGCGTGGACCGTGGCTTCTCGGGGGCGTTGTCCTACGCCACCTGCAGAGACTCGTATCGACTTTCTAACGTCTCTGAGTCGGAAACTTCCAGCCCCGGTCCGCCTCCGCCTTCGCCTTCGCCTACATTGGAAATCGAAAGTGGAATGAACAAGTCCATTGATAATAACAACTTCTCTTCTTACTCTCAGGATCTCTCCTCTTGCTCCATAGAAAGCGACACATTCACTCGCCCTTCTCATTCTCATGCCCAGGACGATGTTGAAGCTGAGATGAGAAGGCTGAAACTGGAGCTCAAACAAACCATGGACATGTACAGTACGGCCTGTAAAGAAGCCCTAAATGCTAATCAAAAGGCGACCGAGCTCCATCGCTGGAAAGTGGAAGAAGAGCAAAGGTTCGAAGAGGCGAGAATGGCGGAGGAAGCAGCATTAGCAATGGCAGAGAGGGAGAAGATGAAATGCCAAGCAGCAATTAAGGCAGCCGAAGCCGCTCAGAAGATCGCAGAACTCGAGGCGAGGAAAAGAGAGAATGCAGAGAGAATGGCAGACATGGAGGCAGAGGAAACGAAAAAAGCACTCTCAGGATTCGGCCATGGAGAAATTGGATACAGAAAATACACAATCGAAGAAATTGAAATCGCCACGAACCACTTCTCTAATTCTTTGAAGATCGGCGAAGGCGGTTACGGTCCAGTCTTCCGTGGAAAACTCGACCACACGCCGGTGGCTATCAAGGTTCTCCGGCCGGACGCTGCTCATGGCCGATCGCAATTTCAGCAAGAAGTTGAAGTTCTAAGCTGTATTCGACATCCGAATATGGTTTTACTTCTCGGAGCCTGTCCTGAGAACGGTTGTTTAGTTTACGAATTCATGGGGAACGGAAGCTTAGAAGACTGTCTCTTCCGAAAAGCCAACAATCCAGTTCTTTCATGGCAGTTACGATTCCGAATCGCGGCGGAGATCGCGACCGGACTGCTCTTCCTGCACCAACACAGACCAGAGCCGATCGTACACCGCGATCTGAAACCAGGGAACATTTTGCTAGATCGGAACTACGTGAGCAAAATCAGCGACGTCGGACTGGCGAGGCTAGTTCCTCTATCGGTGGCCGATTCAGTGACTCAGTATCGGATGACGGCTACGGCAGGAACGTTCTGCTACATCGATCCAGAGTATCAGCTAACAGGATTGCTAGGGATTCAATCCGACATTTACTCGCTGGGCGTGATGCTTCTGCAAATAGTCACTGGCAGGCCGCCGATCGGACTAGCACACGCCGTCGAGAGGGCGATTAAGAAGGGAAAATTTGCAGAAATGCTTGATCCGGAGGTAAAGGACTGGCCATTTGAAGACGCGCTGAAGTTCGCGAAGCTTTCGATGAAATGTACAGAGATGAGGAAGAGGGATCGGCCGGATCTTGGGAAGGTGGTGCTGCCGGAGCTCAATCGGTTGAGAGCGATGGCGGAAGAGAGTATGAGAATTCGGGCGTTCAACCGCAGCAGTGCATCTTCATCGCCATATACAAGCCAGACTTCTTCTTCTCAGGAACCAATGAGAATACATCAAGAGCAGTGCGGATCTTGGGTTGAAAGCTCAAGCAGCCAATCAAATAGTAGCACGTCATCATAG 2451 50.22 MARGGAQKKEMVVAIDKDKGSQQALKWTIDRLLSRGQVVTLLHVKHKSSSAANATTNLNADFDHGETALYKHHHIDNHISDQFFLPFRCICTSSNITCNEVMIEGSDIPKTLTNYVSKNVVDILVMGAPTRSAAQIYKRFKSDVPSSVSKGAPDFCTVYTIGHRGKVSVRQPTVPMPARPIAPPRNQSLRASPRPQLLHQRTNVSQLLAEPNQLWSKSSRRLETQSSMRVPHALQQYLDFKSPFTRQGSRAPVSKRVDPSTVDSDNSFVSCGRRSVDRGFSGALSYATCRDSYRLSNVSESETSSPGPPPPSPSPTLEIESGMNKSIDNNNFSSYSQDLSSCSIESDTFTRPSHSHAQDDVEAEMRRLKLELKQTMDMYSTACKEALNANQKATELHRWKVEEEQRFEEARMAEEAALAMAEREKMKCQAAIKAAEAAQKIAELEARKRENAERMADMEAEETKKALSGFGHGEIGYRKYTIEEIEIATNHFSNSLKIGEGGYGPVFRGKLDHTPVAIKVLRPDAAHGRSQFQQEVEVLSCIRHPNMVLLLGACPENGCLVYEFMGNGSLEDCLFRKANNPVLSWQLRFRIAAEIATGLLFLHQHRPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPLSVADSVTQYRMTATAGTFCYIDPEYQLTGLLGIQSDIYSLGVMLLQIVTGRPPIGLAHAVERAIKKGKFAEMLDPEVKDWPFEDALKFAKLSMKCTEMRKRDRPDLGKVVLPELNRLRAMAEESMRIRAFNRSSASSSPYTSQTSSSQEPMRIHQEQCGSWVESSSSQSNSSTSS 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4142791 4147078 - CmaCh05G007330.1 Cma05g00733 294851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00733 816 MobiDBLite consensus disorder prediction 245 268 - -
Cma05g00733 816 SUPERFAMILY Protein kinase-like (PK-like) 474 751 IPR011009 -
Cma05g00733 816 MobiDBLite consensus disorder prediction 297 330 - -
Cma05g00733 816 ProSiteProfiles Protein kinase domain profile. 492 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00733 816 SMART serkin_6 492 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00733 816 Coils Coil 358 378 - -
Cma05g00733 816 MobiDBLite consensus disorder prediction 171 192 - -
Cma05g00733 816 Coils Coil 404 461 - -
Cma05g00733 816 Gene3D Transferase(Phosphotransferase) domain 1 565 778 - -
Cma05g00733 816 Pfam Protein tyrosine and serine/threonine kinase 497 750 IPR001245 GO:0004672|GO:0006468
Cma05g00733 816 PANTHER OS02G0152300 PROTEIN 7 789 - -
Cma05g00733 816 MobiDBLite consensus disorder prediction 773 816 - -
Cma05g00733 816 Pfam Universal stress protein family 9 133 IPR006016 -
Cma05g00733 816 CDD STK_N 12 161 - -
Cma05g00733 816 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 7 789 - -
Cma05g00733 816 Gene3D HUPs 8 158 IPR014729 -
Cma05g00733 816 Gene3D Phosphorylase Kinase; domain 1 473 564 - -
Cma05g00733 816 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 133 - -
Cma05g00733 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00733 - - - cmax:111492265 1122.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00733 Cma12g00254 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00733 Cma-Chr5:4142791 Cma12g00277 Cma-Chr12:1436928 0 dispersed
Cma12g00935 Cma-Chr12:7273296 Cma05g00733 Cma-Chr5:4142791 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g293 . Blo12g00755 . . Bpe02g01181 . Bma04g00407 . . Cmo12g00207 . Cma05g00733 . Car12g00238 . Cpe07g00217 . Bhi04g00845 . . . Hepe10g0363 . . . . . . . . . . . . . . . . Cme03g01742 . . Bda01g00936 . . Bpe04g00397 . . . . . . Cma12g00254 . Car05g00539 Cpe11g00655 . . . . . . . . Cla08g01224 Cam08g1683 Cec08g1262 Cco08g1382 Clacu08g1381 . Cre08g1166 Lsi08g01087 . Chy03g01247 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007310 0 2 2 2 1 0 2 0 0 1 1 0 2 1 0 2 0 1 2 0 1 1 1 1 0 2 1 1 0 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68584 PF07714 PK_Tyr_Ser-Thr 7.80E-38 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00733 Cma_Chr05 FPKM 0.256143 0.223486 0.813824 0.785931 1.346971 1.705748 1.342886 2.3358 2.37564 1.742499