Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00737 ATGATTTTTCTTTGCCCTGTTTGCTTAAGTTTCATGGAGATTCTATTAGCCATCTGTGGACCTAGCATCGGTGATGCTAAAGATATAAAGGGAATCAAAGGGTTCTCTTATAGTGGAAAAATGTTGGAGGGTGGTCAAAAATTCCCTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCACAAGGGTTTTACCATAAACTTGGTGAGGGAACCAATATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTTGGATCGAATGAGTCTCATACTCGGATCTTAAATCACCAAGGGTTGCGGCGGCGTGCAAATGATAACCATACTTTTCAACATAGTGTTAACCATCGTGGAAGAGTTAGACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACTCTTGATTTAAGGAAACTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTCTACAGAGGTACTTATGATGGCGAAGATGTCGCTATCAAGATCTTGGAGAGGCCAGAGAATGACGTAGAGAAGGCTCAGTTAATGGAACAGCAATATCAGCAGGAGGTGATGATGCTTGCTACTCTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCAATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGTGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGCTCTGTCCCATTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCACAGGGACTTGAAATCAGATAACCTTTTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTAGCTCGGATTGAGGTGCAGACAGAGGGCATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACTTGTATAGCTTTGGTATCGTTCTGTGGGAGCTCATTACTGGAATGCTTCCATTCCAGAACATGACAGCCGTTCAGGCTGCTTTTGCAGTTGTTAACAAGGGAGTTCGTCCTATCATTCCCAATGATTGCTTACCTGTTTTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCTGATGTTAGGCCATCATTTTCCGAGGTCGTTCGAATGCTAGAGAATGCACAGACTGAGATCATGACGACTGTCCGTAAAGCTCGTTTCAGGTGTTGCATTATGCAGCCGATGACAACAGACTGA 1362 44.49 MIFLCPVCLSFMEILLAICGPSIGDAKDIKGIKGFSYSGKMLEGGQKFPGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNHRGRVRHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDVEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFSEVVRMLENAQTEIMTTVRKARFRCCIMQPMTTD 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4197602 4206909 - CmaCh05G007370.1 Cma05g00737 294855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00737 453 CDD STKc_MAP3K-like 179 426 - -
Cma05g00737 453 Pfam Protein tyrosine and serine/threonine kinase 173 426 IPR001245 GO:0004672|GO:0006468
Cma05g00737 453 Gene3D Transferase(Phosphotransferase) domain 1 255 448 - -
Cma05g00737 453 SUPERFAMILY Protein kinase-like (PK-like) 157 426 IPR011009 -
Cma05g00737 453 PANTHER SERINE-THREONINE PROTEIN KINASE 42 444 - -
Cma05g00737 453 SMART serkin_6 172 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00737 453 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 42 444 - -
Cma05g00737 453 Gene3D Phosphorylase Kinase; domain 1 161 254 - -
Cma05g00737 453 ProSiteProfiles Protein kinase domain profile. 172 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00737 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Cma05g00737 453 PRINTS Tyrosine kinase catalytic domain signature 397 419 IPR001245 GO:0004672|GO:0006468
Cma05g00737 453 PRINTS Tyrosine kinase catalytic domain signature 250 263 IPR001245 GO:0004672|GO:0006468
Cma05g00737 453 PRINTS Tyrosine kinase catalytic domain signature 334 344 IPR001245 GO:0004672|GO:0006468
Cma05g00737 453 PRINTS Tyrosine kinase catalytic domain signature 288 306 IPR001245 GO:0004672|GO:0006468
Cma05g00737 453 PRINTS Tyrosine kinase catalytic domain signature 353 375 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00737 Cma-Chr5:4197602 Cma07g00340 Cma-Chr7:1466430 4.58E-99 dispersed
Cma03g01061 Cma-Chr3:7314253 Cma05g00737 Cma-Chr5:4197602 5.36E-20 transposed
Cma12g00938 Cma-Chr12:7297489 Cma05g00737 Cma-Chr5:4197602 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68586 PF07714 PK_Tyr_Ser-Thr 2.10E-65 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00737 - - csv:101213713 825.854