Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00742 ATGGCATCCACCTCCTCCAATTCGCCCTGTGCTGCTTGCAAATTCCTCCGCCGTAAATGTCAACCGGAATGTGTTTTCGCGCCCTATTTCCCGCCGGATCAGCCTCAGAAATTCGCGAATGTTCATAAGGTATTTGGCGCTAGTAATGTCACTAAACTTCTCAACGAATTGCATCCTCACCAGCGCGAAGACGCTGTTAATTCTCTCGCTTATGAAGCCGATATGCGTCTCCGTGATCCTGTTTATGGCTGTGTTGGAGTAATTTCTCTGCTTCAACATCAACTCTGTAAACTCCAAATGGATCTCACTTCCGCTAAATCCGAACTCTCTAAGTATAAAACCCTAGGCATTGGGAACCCCGCCGCCCTGATTTCCTCGCCTTCTTCTCTTACTGCACAGCGGAACCACCAGCCGACGTTTAATTTTGGTAGAGATCAACCTCATAGTCTCTGTTACGATCAATTTTTCCCTCGCGATCAACAACAACAACAACAACAACAACAACAGATGATGCTCCGACGAAACTTCGACGGTGGTACTAACTACGATGGACTTTTGGCCGTCAATGTCACCGTCGGTAACCTTACCCACCCGTTCCAGCAATCTCGCGCCGCTGCTGGAGACGATCGTCGCGGAACTCTCGACCATTCTTAG 654 48.78 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTSAKSELSKYKTLGIGNPAALISSPSSLTAQRNHQPTFNFGRDQPHSLCYDQFFPRDQQQQQQQQQQMMLRRNFDGGTNYDGLLAVNVTVGNLTHPFQQSRAAAGDDRRGTLDHS 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4237544 4238197 + CmaCh05G007420.1 Cma05g00742 294860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00742 217 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cma05g00742 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 2 184 - -
Cma05g00742 217 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Cma05g00742 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02894 Cma-Chr4:19177494 Cma05g00742 Cma-Chr5:4237544 1.24E-45 dispersed
Cma05g00742 Cma-Chr5:4237544 Cma20g01123 Cma-Chr20:8866401 1.32E-59 dispersed
Cma17g00721 Cma-Chr17:5922371 Cma05g00742 Cma-Chr5:4237544 5.28E-30 dispersed
Cma05g00742 Cma-Chr5:4237544 Cma11g00077 Cma-Chr11:374968 1.12E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35080 PF03195 LOB 1.80E-43 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00742 - - csv:101203281 382.489