Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00742 | ATGGCATCCACCTCCTCCAATTCGCCCTGTGCTGCTTGCAAATTCCTCCGCCGTAAATGTCAACCGGAATGTGTTTTCGCGCCCTATTTCCCGCCGGATCAGCCTCAGAAATTCGCGAATGTTCATAAGGTATTTGGCGCTAGTAATGTCACTAAACTTCTCAACGAATTGCATCCTCACCAGCGCGAAGACGCTGTTAATTCTCTCGCTTATGAAGCCGATATGCGTCTCCGTGATCCTGTTTATGGCTGTGTTGGAGTAATTTCTCTGCTTCAACATCAACTCTGTAAACTCCAAATGGATCTCACTTCCGCTAAATCCGAACTCTCTAAGTATAAAACCCTAGGCATTGGGAACCCCGCCGCCCTGATTTCCTCGCCTTCTTCTCTTACTGCACAGCGGAACCACCAGCCGACGTTTAATTTTGGTAGAGATCAACCTCATAGTCTCTGTTACGATCAATTTTTCCCTCGCGATCAACAACAACAACAACAACAACAACAACAGATGATGCTCCGACGAAACTTCGACGGTGGTACTAACTACGATGGACTTTTGGCCGTCAATGTCACCGTCGGTAACCTTACCCACCCGTTCCAGCAATCTCGCGCCGCTGCTGGAGACGATCGTCGCGGAACTCTCGACCATTCTTAG | 654 | 48.78 | MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTSAKSELSKYKTLGIGNPAALISSPSSLTAQRNHQPTFNFGRDQPHSLCYDQFFPRDQQQQQQQQQQMMLRRNFDGGTNYDGLLAVNVTVGNLTHPFQQSRAAAGDDRRGTLDHS | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4237544 | 4238197 | + | CmaCh05G007420.1 | Cma05g00742 | 294860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00742 | 217 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
Cma05g00742 | 217 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-LIKE | 2 | 184 | - | - | |
Cma05g00742 | 217 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - | |
Cma05g00742 | 217 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 184 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g02894 | Cma-Chr4:19177494 | Cma05g00742 | Cma-Chr5:4237544 | 1.24E-45 | dispersed | |
Cma05g00742 | Cma-Chr5:4237544 | Cma20g01123 | Cma-Chr20:8866401 | 1.32E-59 | dispersed | |
Cma17g00721 | Cma-Chr17:5922371 | Cma05g00742 | Cma-Chr5:4237544 | 5.28E-30 | dispersed | |
Cma05g00742 | Cma-Chr5:4237544 | Cma11g00077 | Cma-Chr11:374968 | 1.12E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35080 | PF03195 | LOB | 1.80E-43 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00742 | - | - | csv:101203281 | 382.489 |