Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00760 ATGTCTCAGGTGACTTCTTTTAATATGGGTATTTCAAGGACGGTGTCACAATGCCGACATTGCGCCCTCGCCATGTGTCGGATATTGGAATATGCACCTGCTATCTGTTGCTCTGTTTTCAGTGATATGGGGACAAAGCTTATAAGAGCTTGCGTTGAAGAAGATAGCGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATACATATCCTTTTCTCTAGGGAAGGTGCACGATCATGAAAAACAAGACGGTTGTGTCCCTGCTAGTGGGTCGGCAACCGTCTCTGAATCTCAGCCAGTTAAAGTGGAAAGTGAGGTAGAAGTTGCCAATGTTGCAAAAGTAACGAGATCCCTTCGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGGTGACGAGCTTGATACGAAGCATCTAGATCAGAACTTTTCTTTAAGACCTTCTCTTTCGAAGGGAGTCATTCGTGGATGTCCACATTGTAATAATTGCCAAAAGGTTATTGCCAGATGGCGTCCAGAAGAATCATGCCGACCAAATCTCGAGGATGCACCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATTCGAGCGAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCTTCGTCTTGGAAGCCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACGCGTGTCCAAAGGATTGATAAGCTTCAAAACCGAGATTCACTAAGAAAGAACTATCGGTTTTGCAGTCAGATGAGGAGGAAAAGGAGGAGGGGTAATCGAAAGGGGGTCGATGTTACCATCTTAAATGGAATAAATGGAGATGCTGGGCCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTTCTTTAGCTTTGTTTCAAAAATATGCGGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCGATGATACTTCAAAGGGTTGTAACCCGTCAATGCTGCCAGAGAACGAACATTGGAAACCATCTTTGGAAAATATCGAGGGCGAATATTGGCGGATGGTAGAGAAACCAACAGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCTGAAGAGTTGCAGTCAAGAGGGCTCGACATCAGATGAAGAGAAGTACGTAAAATCTGGCTGGAACCTCAATAACTTTCCGAAGCTTCCTGGATCAGTTCTTAGCTATGAGAACAGTAACATATCTGGAGTCCTGGTACCATGGCTGTATATCGGGATGTGCTTTTCGTCATTTTGCTGGCACGTTGAAGATCACCATCTCTACTCTCTGAACTACATGCACTGGGGCGATCCCAAAGTCTGGTATGGTGTTCCAGGGAACGGTGCCAGTAAATTAGAAGACGCCATGAAAAAGCATTTACCTGACCTCTTTCAAGAACAGCCCGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCTATATTGAAAATCGAGGGTGTGCCTGTATATAGATGTATTCAGAATCCCGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTCGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGGGAACAGGGACGAAGAACTACTATTTCCCACGATAAGCTATTGCTTGGCGCTGCACGAGAAGCTGTGAGAGCACATTGGGAACTAAATTTTCTGAAAAAGCATACGTTGGATAACTTAAGATGGAATAATGTTTGCGGAAAAGATGGCATCTTAGCAAGAGCGTTCAAGACTCGAGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCAACGGCAATTAAGATGGAGAGCAACTTTGACGCCTCTAATGAGAGAGAGTGCATTTCATGCCTCTTTGACTTGCATCTGTCGGCCGTCGGGTGTCATTGTTCACCGGATAAATATGTATGCTTGAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGGAAAAGAGAATTTTTCTCTTCCGCTATGACATCAGCGAATTGAACGTTCTTCTTGAAGCATTGGAGGGTAAGTTAAGTGCAGTATACCGGTGGGCTAGGCAGAATCTCGGTCTAGCGCTCAGTACGTCAAGGGAGTTGAGTTCTCAATCATCGTCCATGTCCCTTGGGAAGCCTCAATGGAAAGAAATCCTGAGGCAATCTTCATTATTGCCCGCTCTAACCGCTATTGACAGCGCTTCTCATCATGCCAAAATGTTATCTACCGTTAATGGTTCGGGAAAGGTAGTTGAGCAGCAAAATTATAAATCTGAGGTGAAAAATGAAAACCATGACCTTGTGGCAACGAATTCGAGGCATACCGATTCGCAGTCCTGTAAGGAGGATACAAATGCTCTGAATTTGGATAAAATGTGTACTGAAAATGTGATACTACTGAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGCGTAGCTGAAAATTTATCAGTAAAACCGCTCGAAACTTCAAATCGTTGTATTGATTCTAAGGCTAGCCTGTGCAACTACAATGATAATACGAGTCTGCACTGCCCGGTGACTGATGCAACGACCATCGAAGAGAAGGAAGTCCACTTGTTGATTGAAAGAAAATCGAATAATTGCCAATCGAGCGTTGTTCCTTTAAATAGAAATGCAGCTAATGCTATTCAGAACAACAATTTTTCAGAAGCTGGGTTAGGTCATAGTAATAAAGTATTTTCAGCTTCGACGGACATCGATTCTCGAAAATCACAGACTTGTGGCTCGGGAAAACCGAATGAGGGTAAGCATGGAAACGTGGGAACAAGTGCTACCTCTTGTGTGTTAGACCCTAGTAGAACCACTGCAAGTTTGTCCTACAATCAAGCTAATATGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGCTAGTTCGGAGAATTAACTGCAACGTAGAGCCTTTAGAATATGGAACCGTGCTCTCAGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCGAAAGGATTTAAGAGCAGGGTCAAGTATATAAGCGTTTTAGATCCATCAACTTTGTGTTACTATGTTTCTGAAATTCTAGACGCCGGACGGGACGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCATCTGAGGTATTCGTTCACGTTTCTGCTGCTAGATGTTGGGAGCTGGTTCGAGATCGAGTTAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAATGAATCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGCTTAGAAATGTTCGGATTCACTTCACCGACAATCGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTTGCGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCACGTACATAGTCCACAACTGTCTCGATCGACAGATATGAATTGCAACATGCAAACGACCGAAAGGAACCATAGGGGGGTCGATCCTAGGCAAGCTGGAGTCGATATAATAGTACTTAGGGGATTGTTGAAGAAGGCAAACATTGATGAATTAAACTTACTCTATACCATTTTAAATGATAGTAGTAGGGCAACGGTCGATCAAGGCGCGTTGACTCGGCTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3744 43.7 MSQVTSFNMGISRTVSQCRHCALAMCRILEYAPAICCSVFSDMGTKLIRACVEEDSDDFPSVPPGFESYISFSLGKVHDHEKQDGCVPASGSATVSESQPVKVESEVEVANVAKVTRSLRRKPCVNYRQYDYCSGDELDTKHLDQNFSLRPSLSKGVIRGCPHCNNCQKVIARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSLRKNYRFCSQMRRKRRRGNRKGVDVTILNGINGDAGPYEAERFGFDPGPDFSLALFQKYADDFKSQYFSKPLDDTSKGCNPSMLPENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFLKSCSQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYENSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGASKLEDAMKKHLPDLFQEQPDLLHKLVTQLSPSILKIEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNFLKKHTLDNLRWNNVCGKDGILARAFKTRVEMECARRNLPCSSSTAIKMESNFDASNERECISCLFDLHLSAVGCHCSPDKYVCLNHAKQLCSCAWEKRIFLFRYDISELNVLLEALEGKLSAVYRWARQNLGLALSTSRELSSQSSSMSLGKPQWKEILRQSSLLPALTAIDSASHHAKMLSTVNGSGKVVEQQNYKSEVKNENHDLVATNSRHTDSQSCKEDTNALNLDKMCTENVILLSDDEGDEHKKTISNGVAENLSVKPLETSNRCIDSKASLCNYNDNTSLHCPVTDATTIEEKEVHLLIERKSNNCQSSVVPLNRNAANAIQNNNFSEAGLGHSNKVFSASTDIDSRKSQTCGSGKPNEGKHGNVGTSATSCVLDPSRTTASLSYNQANMDRFLRQKGPRMAKLVRRINCNVEPLEYGTVLSGKSWSNSRAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSAARCWELVRDRVNQEIAKQHKLGRMNLPPLQPPGSLDGLEMFGFTSPTIVQAIEAMDRNRVCCEYWDSRPYSRPHVHSPQLSRSTDMNCNMQTTERNHRGVDPRQAGVDIIVLRGLLKKANIDELNLLYTILNDSSRATVDQGALTRLLNEEIQSHRR 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4416448 4425744 - CmaCh05G007600.1 Cma05g00760 294878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00760 1247 Pfam F/Y rich C-terminus 1070 1154 IPR003889 GO:0005634
Cma05g00760 1247 SMART fyrc_3 1072 1166 IPR003889 GO:0005634
Cma05g00760 1247 SMART fyrn_3 1022 1066 IPR003888 GO:0005634
Cma05g00760 1247 ProSiteProfiles FYR domain FYRN motif profile. 1008 1066 IPR003888 GO:0005634
Cma05g00760 1247 SMART JmjN_1 186 227 IPR003349 -
Cma05g00760 1247 ProSiteProfiles JmjC domain profile. 401 567 IPR003347 -
Cma05g00760 1247 SUPERFAMILY Clavaminate synthase-like 402 595 - -
Cma05g00760 1247 PANTHER JUMONJI 14-RELATED 124 805 - -
Cma05g00760 1247 PANTHER JUMONJI 14-RELATED 824 1244 - -
Cma05g00760 1247 Pfam JmjC domain, hydroxylase 434 550 IPR003347 -
Cma05g00760 1247 ProSiteProfiles FYR domain FYRC motif profile. 1068 1158 IPR003889 GO:0005634
Cma05g00760 1247 SMART cupin_9 401 567 IPR003347 -
Cma05g00760 1247 PANTHER LYSINE-SPECIFIC DEMETHYLASE 124 805 - -
Cma05g00760 1247 PANTHER LYSINE-SPECIFIC DEMETHYLASE 824 1244 - -
Cma05g00760 1247 Pfam F/Y-rich N-terminus 1022 1063 IPR003888 GO:0005634
Cma05g00760 1247 Gene3D - 1015 1152 - -
Cma05g00760 1247 Gene3D Cupin 172 551 - -
Cma05g00760 1247 ProSiteProfiles JmjN domain profile. 187 228 IPR003349 -
Cma05g00760 1247 Pfam jmjN domain 188 221 IPR003349 -
Cma05g00760 1247 MobiDBLite consensus disorder prediction 952 973 - -
Cma05g00760 1247 Pfam C5HC2 zinc finger 657 707 IPR004198 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00760 Cma-Chr5:4416448 Cma13g00454 Cma-Chr13:5045463 3.30E-42 dispersed
Cma05g00760 Cma-Chr5:4416448 Cma12g00959 Cma-Chr12:7523251 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35081 PF02373 JmjC 2.30E-44 CL0029 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00760 - - csv:101208186 2046.55