Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00760 ATGTCTCAGGTGACTTCTTTTAATATGGGTATTTCAAGGACGGTGTCACAATGCCGACATTGCGCCCTCGCCATGTGTCGGATATTGGAATATGCACCTGCTATCTGTTGCTCTGTTTTCAGTGATATGGGGACAAAGCTTATAAGAGCTTGCGTTGAAGAAGATAGCGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATACATATCCTTTTCTCTAGGGAAGGTGCACGATCATGAAAAACAAGACGGTTGTGTCCCTGCTAGTGGGTCGGCAACCGTCTCTGAATCTCAGCCAGTTAAAGTGGAAAGTGAGGTAGAAGTTGCCAATGTTGCAAAAGTAACGAGATCCCTTCGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGGTGACGAGCTTGATACGAAGCATCTAGATCAGAACTTTTCTTTAAGACCTTCTCTTTCGAAGGGAGTCATTCGTGGATGTCCACATTGTAATAATTGCCAAAAGGTTATTGCCAGATGGCGTCCAGAAGAATCATGCCGACCAAATCTCGAGGATGCACCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATTCGAGCGAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCGCCTTCGTCTTGGAAGCCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACGCGTGTCCAAAGGATTGATAAGCTTCAAAACCGAGATTCACTAAGAAAGAACTATCGGTTTTGCAGTCAGATGAGGAGGAAAAGGAGGAGGGGTAATCGAAAGGGGGTCGATGTTACCATCTTAAATGGAATAAATGGAGATGCTGGGCCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTTCTTTAGCTTTGTTTCAAAAATATGCGGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCGATGATACTTCAAAGGGTTGTAACCCGTCAATGCTGCCAGAGAACGAACATTGGAAACCATCTTTGGAAAATATCGAGGGCGAATATTGGCGGATGGTAGAGAAACCAACAGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCTGAAGAGTTGCAGTCAAGAGGGCTCGACATCAGATGAAGAGAAGTACGTAAAATCTGGCTGGAACCTCAATAACTTTCCGAAGCTTCCTGGATCAGTTCTTAGCTATGAGAACAGTAACATATCTGGAGTCCTGGTACCATGGCTGTATATCGGGATGTGCTTTTCGTCATTTTGCTGGCACGTTGAAGATCACCATCTCTACTCTCTGAACTACATGCACTGGGGCGATCCCAAAGTCTGGTATGGTGTTCCAGGGAACGGTGCCAGTAAATTAGAAGACGCCATGAAAAAGCATTTACCTGACCTCTTTCAAGAACAGCCCGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCTATATTGAAAATCGAGGGTGTGCCTGTATATAGATGTATTCAGAATCCCGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTCGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGGGAACAGGGACGAAGAACTACTATTTCCCACGATAAGCTATTGCTTGGCGCTGCACGAGAAGCTGTGAGAGCACATTGGGAACTAAATTTTCTGAAAAAGCATACGTTGGATAACTTAAGATGGAATAATGTTTGCGGAAAAGATGGCATCTTAGCAAGAGCGTTCAAGACTCGAGTTGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCAACGGCAATTAAGATGGAGAGCAACTTTGACGCCTCTAATGAGAGAGAGTGCATTTCATGCCTCTTTGACTTGCATCTGTCGGCCGTCGGGTGTCATTGTTCACCGGATAAATATGTATGCTTGAATCATGCAAAGCAGTTGTGTTCTTGTGCTTGGGAAAAGAGAATTTTTCTCTTCCGCTATGACATCAGCGAATTGAACGTTCTTCTTGAAGCATTGGAGGGTAAGTTAAGTGCAGTATACCGGTGGGCTAGGCAGAATCTCGGTCTAGCGCTCAGTACGTCAAGGGAGTTGAGTTCTCAATCATCGTCCATGTCCCTTGGGAAGCCTCAATGGAAAGAAATCCTGAGGCAATCTTCATTATTGCCCGCTCTAACCGCTATTGACAGCGCTTCTCATCATGCCAAAATGTTATCTACCGTTAATGGTTCGGGAAAGGTAGTTGAGCAGCAAAATTATAAATCTGAGGTGAAAAATGAAAACCATGACCTTGTGGCAACGAATTCGAGGCATACCGATTCGCAGTCCTGTAAGGAGGATACAAATGCTCTGAATTTGGATAAAATGTGTACTGAAAATGTGATACTACTGAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGCGTAGCTGAAAATTTATCAGTAAAACCGCTCGAAACTTCAAATCGTTGTATTGATTCTAAGGCTAGCCTGTGCAACTACAATGATAATACGAGTCTGCACTGCCCGGTGACTGATGCAACGACCATCGAAGAGAAGGAAGTCCACTTGTTGATTGAAAGAAAATCGAATAATTGCCAATCGAGCGTTGTTCCTTTAAATAGAAATGCAGCTAATGCTATTCAGAACAACAATTTTTCAGAAGCTGGGTTAGGTCATAGTAATAAAGTATTTTCAGCTTCGACGGACATCGATTCTCGAAAATCACAGACTTGTGGCTCGGGAAAACCGAATGAGGGTAAGCATGGAAACGTGGGAACAAGTGCTACCTCTTGTGTGTTAGACCCTAGTAGAACCACTGCAAGTTTGTCCTACAATCAAGCTAATATGGACAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCGAAGCTAGTTCGGAGAATTAACTGCAACGTAGAGCCTTTAGAATATGGAACCGTGCTCTCAGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCGAAAGGATTTAAGAGCAGGGTCAAGTATATAAGCGTTTTAGATCCATCAACTTTGTGTTACTATGTTTCTGAAATTCTAGACGCCGGACGGGACGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCATCTGAGGTATTCGTTCACGTTTCTGCTGCTAGATGTTGGGAGCTGGTTCGAGATCGAGTTAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAATGAATCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGCTTAGAAATGTTCGGATTCACTTCACCGACAATCGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTTGCGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCACGTACATAGTCCACAACTGTCTCGATCGACAGATATGAATTGCAACATGCAAACGACCGAAAGGAACCATAGGGGGGTCGATCCTAGGCAAGCTGGAGTCGATATAATAGTACTTAGGGGATTGTTGAAGAAGGCAAACATTGATGAATTAAACTTACTCTATACCATTTTAAATGATAGTAGTAGGGCAACGGTCGATCAAGGCGCGTTGACTCGGCTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA 3744 43.7 MSQVTSFNMGISRTVSQCRHCALAMCRILEYAPAICCSVFSDMGTKLIRACVEEDSDDFPSVPPGFESYISFSLGKVHDHEKQDGCVPASGSATVSESQPVKVESEVEVANVAKVTRSLRRKPCVNYRQYDYCSGDELDTKHLDQNFSLRPSLSKGVIRGCPHCNNCQKVIARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSLRKNYRFCSQMRRKRRRGNRKGVDVTILNGINGDAGPYEAERFGFDPGPDFSLALFQKYADDFKSQYFSKPLDDTSKGCNPSMLPENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFLKSCSQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYENSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGASKLEDAMKKHLPDLFQEQPDLLHKLVTQLSPSILKIEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNFLKKHTLDNLRWNNVCGKDGILARAFKTRVEMECARRNLPCSSSTAIKMESNFDASNERECISCLFDLHLSAVGCHCSPDKYVCLNHAKQLCSCAWEKRIFLFRYDISELNVLLEALEGKLSAVYRWARQNLGLALSTSRELSSQSSSMSLGKPQWKEILRQSSLLPALTAIDSASHHAKMLSTVNGSGKVVEQQNYKSEVKNENHDLVATNSRHTDSQSCKEDTNALNLDKMCTENVILLSDDEGDEHKKTISNGVAENLSVKPLETSNRCIDSKASLCNYNDNTSLHCPVTDATTIEEKEVHLLIERKSNNCQSSVVPLNRNAANAIQNNNFSEAGLGHSNKVFSASTDIDSRKSQTCGSGKPNEGKHGNVGTSATSCVLDPSRTTASLSYNQANMDRFLRQKGPRMAKLVRRINCNVEPLEYGTVLSGKSWSNSRAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSAARCWELVRDRVNQEIAKQHKLGRMNLPPLQPPGSLDGLEMFGFTSPTIVQAIEAMDRNRVCCEYWDSRPYSRPHVHSPQLSRSTDMNCNMQTTERNHRGVDPRQAGVDIIVLRGLLKKANIDELNLLYTILNDSSRATVDQGALTRLLNEEIQSHRR 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4416448 4425744 - CmaCh05G007600.1 Cma05g00760 294878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00760 1247 Pfam F/Y rich C-terminus 1070 1154 IPR003889 GO:0005634
Cma05g00760 1247 SMART fyrc_3 1072 1166 IPR003889 GO:0005634
Cma05g00760 1247 SMART fyrn_3 1022 1066 IPR003888 GO:0005634
Cma05g00760 1247 ProSiteProfiles FYR domain FYRN motif profile. 1008 1066 IPR003888 GO:0005634
Cma05g00760 1247 SMART JmjN_1 186 227 IPR003349 -
Cma05g00760 1247 ProSiteProfiles JmjC domain profile. 401 567 IPR003347 -
Cma05g00760 1247 SUPERFAMILY Clavaminate synthase-like 402 595 - -
Cma05g00760 1247 PANTHER JUMONJI 14-RELATED 124 805 - -
Cma05g00760 1247 PANTHER JUMONJI 14-RELATED 824 1244 - -
Cma05g00760 1247 Pfam JmjC domain, hydroxylase 434 550 IPR003347 -
Cma05g00760 1247 ProSiteProfiles FYR domain FYRC motif profile. 1068 1158 IPR003889 GO:0005634
Cma05g00760 1247 SMART cupin_9 401 567 IPR003347 -
Cma05g00760 1247 PANTHER LYSINE-SPECIFIC DEMETHYLASE 124 805 - -
Cma05g00760 1247 PANTHER LYSINE-SPECIFIC DEMETHYLASE 824 1244 - -
Cma05g00760 1247 Pfam F/Y-rich N-terminus 1022 1063 IPR003888 GO:0005634
Cma05g00760 1247 Gene3D - 1015 1152 - -
Cma05g00760 1247 Gene3D Cupin 172 551 - -
Cma05g00760 1247 ProSiteProfiles JmjN domain profile. 187 228 IPR003349 -
Cma05g00760 1247 Pfam jmjN domain 188 221 IPR003349 -
Cma05g00760 1247 MobiDBLite consensus disorder prediction 952 973 - -
Cma05g00760 1247 Pfam C5HC2 zinc finger 657 707 IPR004198 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00760 - - - csv:101208186 2046.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00760 Cma-Chr5:4416448 Cma13g00454 Cma-Chr13:5045463 3.30E-42 dispersed
Cma05g00760 Cma-Chr5:4416448 Cma12g00959 Cma-Chr12:7523251 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00760 . 43 1246 JUMONJI Transcription Factor Family AT1G08620 52.8 0.0e+00 1212.6
Cma12g00959 . 1 1122 JUMONJI Transcription Factor Family AT1G08620 53.9 0.0e+00 1160.2
Cma18g00533 . 9 558 JUMONJI Transcription Factor Family AT1G08620 59.9 3.1e-188 656.8
Cma18g00533 . 4 560 JUMONJI Transcription Factor Family AT1G30810 63.8 6.8e-203 704.9
Cma18g00533 . 4 573 JUMONJI Transcription Factor Family AT2G34880 55.0 1.5e-178 624.0
Cma18g00533 . 35 560 JUMONJI Transcription Factor Family AT4G20400 61.7 4.4e-195 679.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35081 PF02373 JmjC 2.30E-44 CL0029 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00760 Cma_Chr05 FPKM 6.279321 7.836789 6.729821 8.262012 6.685137 5.339015 6.195933 7.169069 5.960429 5.923897