Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00792 ATGGGTTCAATCAACTGGTTGGGTTTCTCTCTCTCCCCCCAACAACACCAACACCAACTCCCCCACCACCCCTCCGACCTCCCTCACGGCGTCTCCGCCGCTGCCTTCACCACCGACCAAATCTCCGCCTCTGACGTCCCCGCCGTCTGCTTTGACAACCTTCCTTCCTCCTATGGCGTCTATGACTCTCAAGATTGGAATAGTGTGAAGGGTTTAGGGCAGACTCAAAGTTCGGAGTTTTCTGGTTTAATCGAAACCCATCACCAACCAAAGCTTGAAAATTTCCTCGGCCATCACTCTTTCACCGACCAAGACCACGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATCTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGTCAAACGGCGGAAGCGGTGACGGTGGTGGAAGACCCAACGCCAGTAACGGTAACTACACTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAACCAACCGGCGCCGCTGCAAGCGGTGGCTAAAAGTGGCGGAGATCACGACGGAGCAGTAGGAAAACCTAATTTCACAAACCCACATACTTTATCGCTGTCGATGAACACCGGGCCACCACCACCACCGTCGCAGTCCTCCGACTCGGAAGCTCTGCCACTTCTCGTAACAAACGGCGGCAAAAGCTCCTCCTCCGATAAGAAACAACCCAAATCATCGGCTACCAAGGTAGACACTGAAAACAGTGCCATTGAAGCTGTCCCAAGAAAATCCATGGACACATTCGGACAAAGAACTTCCATCTACCGCGGTGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTGTGGGACAACAGTTGCAGAAGAGAAGGACAAACCAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCCTACGATTTAGCAGCACTTAAATACTGGGGTACCACTACCACCACCAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGAGATGAAGCACATGACCCGCCAAGAGTTTGTAGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTACCGTGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGAAATAAAGACCTTTACTTAGGAACTTTCAGTACGCAAGAGGAAGCAGCCGAGGCATACGACATAGCAGCCATAAAGTTCCGAGGACTAAATGCTGTGACCAACTTCGACATGACTCGTTACGATGTCAAAGCCATTCTTGAAAGCAATACATTGCCTATCGGTGGTGCTGCCAAGCGCTTAAAAGATATTGACCATTCTGACATTCCTCTGCATCCCCAATCAACTGATGAAAACATTTCATCGCATTTATCTGATGGAATGATTACTACCGGGGGTGGTGGATGGCCAACTGTCGCCTTCCACCACCACCACCCCTACGCCTCTCACTACCCTTATGGTGCACTACAGCAACGGCTGTGGTGCAAGCAAGAGAACGATGTTACTGCCGGGAACTTCTTGGACTCGGTGGACCAGAGCTCCGGGTCGAGCTCGGTGGTTTACAGTAGAGATGGGTACGGTGGGAACTTCGTGATTCCGATGGGGCCAGAAGGGGGCGGATTGGGAGACATTGGAGAAGTGAATATGTTTGGTGGTGGTTGTAACGTGGATGACCCATTCCATGCAACAAGAACGAGCAATTTGTATAATTATAATAATTCCTCCCATCAGCTGCAACAACCACCGCCGGAGCTGCAAGGCTCCTCCGGCAACAACTGGCATCCGCCAGCCAGGTCGGTTTGTCACGGCGGAACTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 1881 50.56 MGSINWLGFSLSPQQHQHQLPHHPSDLPHGVSAAAFTTDQISASDVPAVCFDNLPSSYGVYDSQDWNSVKGLGQTQSSEFSGLIETHHQPKLENFLGHHSFTDQDHAAAVYTNASANYIFQNCSLELPSESNGGSGDGGGRPNASNGNYTSSIGLSMIKTWLRNQPAPLQAVAKSGGDHDGAVGKPNFTNPHTLSLSMNTGPPPPPSQSSDSEALPLLVTNGGKSSSSDKKQPKSSATKVDTENSAIEAVPRKSMDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEEMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLHPQSTDENISSHLSDGMITTGGGGWPTVAFHHHHPYASHYPYGALQQRLWCKQENDVTAGNFLDSVDQSSGSSSVVYSRDGYGGNFVIPMGPEGGGLGDIGEVNMFGGGCNVDDPFHATRTSNLYNYNNSSHQLQQPPPELQGSSGNNWHPPARSVCHGGTPPPFTIWNDT 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5023853 5027273 - CmaCh05G007920.1 Cma05g00792 294910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00792 626 MobiDBLite consensus disorder prediction 129 148 - -
Cma05g00792 626 MobiDBLite consensus disorder prediction 211 243 - -
Cma05g00792 626 Pfam AP2 domain 264 319 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 Pfam AP2 domain 363 413 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 5 513 - -
Cma05g00792 626 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 PRINTS Ethylene responsive element binding protein signature 403 423 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 CDD AP2 362 421 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 ProSiteProfiles AP2/ERF domain profile. 363 421 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 ProSiteProfiles AP2/ERF domain profile. 264 327 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 Gene3D AP2/ERF domain 264 329 IPR036955 GO:0003700|GO:0006355
Cma05g00792 626 Gene3D AP2/ERF domain 363 423 IPR036955 GO:0003700|GO:0006355
Cma05g00792 626 SMART rav1_2 363 427 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 SMART rav1_2 264 333 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 SUPERFAMILY DNA-binding domain 263 329 IPR016177 GO:0003677
Cma05g00792 626 MobiDBLite consensus disorder prediction 578 626 - -
Cma05g00792 626 MobiDBLite consensus disorder prediction 170 253 - -
Cma05g00792 626 SUPERFAMILY DNA-binding domain 362 422 IPR016177 GO:0003677
Cma05g00792 626 MobiDBLite consensus disorder prediction 578 606 - -
Cma05g00792 626 CDD AP2 263 329 IPR001471 GO:0003700|GO:0006355
Cma05g00792 626 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 513 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01236 Cma-Chr2:7276258 Cma05g00792 Cma-Chr5:5023853 1.49E-08 dispersed
Cma04g00859 Cma-Chr4:4401748 Cma05g00792 Cma-Chr5:5023853 1.36E-117 dispersed
Cma05g00792 Cma-Chr5:5023853 Cma20g00072 Cma-Chr20:315450 2.12E-132 dispersed
Cma11g00388 Cma-Chr11:1927730 Cma05g00792 Cma-Chr5:5023853 3.31E-125 transposed
Cma12g00994 Cma-Chr12:7929517 Cma05g00792 Cma-Chr5:5023853 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35084 PF00847 AP2 3.20E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00792 K09285 - csv:101219473 942.569