Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00856 | ATGGATCTCTCCAAGATTGCCAGGAAGCTCGATCTTTCCGACTCCGAAACCCTCACCCGGAAAGCTGGGGAATTCCGTCGCCTCTCCGATCTCCAGTTCAATTCTTCCGCTATTGGCGTTGGTGAGGTTTGCAAGGCCATAATCTGTTTGGAAATTGCCGCTACGAGAATGGATGCATTATATCGCAGATTAGGGATTCTATTTGATAGATCCAATGCTATCAAGTTAAGTGGGATGTCGGAAAAGGCGTACACTAGATCTTTCAATTTGTTTCAGAATGGTCTTGGTTTCAAAAGTAAGCTCGATATCAGAGAATTAGCAGTGCAGTTTGGGTGTATTAGGCTGGTTGCTTCAGTTCAAAATGGCTTATCTCTATACAAGGATCGGTTTGTTGCATCACTGCCAGCTTCTCGACGTGCTAATGCCGACTTCTCCCGATCAGTATTTACGGCTGCAGCTTTTTACTTGTGTGCAAAAAAACACAAGCTGAAGGTTGACAAAGTTAAGCTCATTGAACTCAGTGGAACATCTGAATCTGAATTTTCATGTGTTGCTACTTCCATGAAGGACTTGTGCTTTGACGTCTTTGGAATTTCTAGTGAAAAGAAAGATCCCAGGGATGCCAAAGGGAACAGGGACATGTTAGATGCATTGCCAGAAAAAAGGAAACGTGAGGATGGCGGTTACTTATCTGATGATAATGAAGAGTTTTCAAGAACAAAACGACGCAAGCCAATGGATGAACATGCTTATAATCAGTGGAAATCCTCTGTCATTGCTTCCAATAATCTGACCAAGACAAGAGATCAAGCGCGTGAGGGCCCCACTCCCTCCAAGTCAGGTGTGGAACTGGAACTGGAACTGGACATCCCATACGACGCCGTTTATGTCAGATCCCCCACCTCCAGCTTCCCTCCAGATCTAACTCCGTTCCACCACCCCTACTCTTTCTTATTTCTTCTTCTTCTTCTGCTGCCGATTGCTTCGCCTCTCTCTTCCTGCCGTCGGGCTCAAGGTTCTGTTAAAATAGTCGGGATGAGAGATTTACTAGGGGCATGGCAGCGGAGTGGGTTTGGGAAGGGAGATAGTATAGCTATGGAGATTACTAAGACTGGATCTGACTGCAATATTGTTTCGAATTTGAATTTTGAGACGCATCATGGAGGTGAGGTCGAGACTATTGATGAGTCGGAATCAAAATCTAAAATATTTGAGCCATGTAAATCTCGATATACGGATTATACTCCTTGTCAAGATCAAAGGCGTGCAATGACCTTCCCCAGGAATAACATGCTTTATCGTGAGAGACATTGCCCTGCTGAGGAAGAAAAGTTGCATTGTTTGATACCAGCCCCCAAAGGATATGTAACACCCTTCCCTTGGCCAAAAAGTCGAGACTATGTTCCATTTGCGAATGCACCGTATAAGAGTTTGACCGTCGAGAAGGCTATACAGAACTGGATTCAGTATGAGGGCAATGTATTTAGGTTCCCTGGTGGGGGAACTCAGTTTCCTCAAGGGGCTGATAAGTACATCGATCAGCTGGCTGCTGTGATTCCTATTAAAAATGGGACAGTTAGGACAGCTCTTGATACTGGTTGCGGGGTTGCCAGTTGGGGTGCGTATCTTCTAAGTAGAAATGTGCTAGCCATGTCATTTGCACCACGAGACTCTCACGAAGCACAGGTTCAATTTGCTCTTGAAAGAGGAGTGCCTGCAGTTATTGGTGTTCTGGGTACCATTAAGCTGCCTTATCCATCTAGAGCCTTTGACATGGCTCATTGTTCTCGCTGCTTAATCCCTTGGGGTGGAAATGATGGAACATACCTAATGGAAGTTGATCGAGTTCTGAGGCCGGGTGGTTATTGGGTGCTTTCGGGTCCTCCAATCAACTGGAAGACTAATTATAAGTCATGGCAGCGCCCTAGAGATGAACTTGAGGAGGAACAGAGAAAGATTGAGGATATTGCCAAGCTTCTTTGCTGGGAAAAGAAGTTTGAGAAGGGTGAAATTGCTATTTGGCAGAAGAGAGTAAATACTGATTCATGCCCTGACAGACAGGATGATTCTCGTGATATCTTTTGCAAATCTCCAGTATCAGACGATGTCTGGTATGAAAAAATGGAGACCTGTATCACTCCATATCCTACTGTTGAGAGCTCTGATGAGGTTGCCGGTGGTGAACTGAAGACATTTCCTTCAAGGCTGTATGCTGTACCTCCTAGAATTTCTAGTGGTTCTATTCCTGGAATATCCGTTGAGGCGTATCATGAGGACAATAACAAATGGAAGAGGCATGTGAAGGCTTATAAGAAGATCAATAAACTTATTGATACTGGAAGATATCGTAACATTATGGATATGAATGCTGGTTTGGGAAGCTTTGCCGCATCCCTTGAATCTTCTAAACTATGGGTCATGAACGTGGTACCCACTATAGCCGAGAAAAATACTCTTGGTGCTATCTATGAACGAGGATTAATTGGCATTTACCATGACTGGTGTGAAGCTTTTTCCACTTATCCTAGGACGTATGATCTCATTCATGCCCATGCCATTTTCAGTTTGTACAAGGACAAATGCAACATGGAGGACATTCTTCTGGAAATGGACAGGATTTTGAGACCGGAAGGAGCAGTGATATTCCGGGACGAAGTGGACGTACTTGTTAAGGTAAAGAAGATGATAGGAGGAATGAGATGGGATGCAAAAATGGTGGATCATGAGGATGGTCCTCTGGTGGCTGAGAAGATACTGGTTGCTGTGAAGCAGTATTGGGTCGTAGGTGGAAACAACTCCACATCACACTGA | 2811 | 44.5 | MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRMDALYRRLGILFDRSNAIKLSGMSEKAYTRSFNLFQNGLGFKSKLDIRELAVQFGCIRLVASVQNGLSLYKDRFVASLPASRRANADFSRSVFTAAAFYLCAKKHKLKVDKVKLIELSGTSESEFSCVATSMKDLCFDVFGISSEKKDPRDAKGNRDMLDALPEKRKREDGGYLSDDNEEFSRTKRRKPMDEHAYNQWKSSVIASNNLTKTRDQAREGPTPSKSGVELELELDIPYDAVYVRSPTSSFPPDLTPFHHPYSFLFLLLLLLPIASPLSSCRRAQGSVKIVGMRDLLGAWQRSGFGKGDSIAMEITKTGSDCNIVSNLNFETHHGGEVETIDESESKSKIFEPCKSRYTDYTPCQDQRRAMTFPRNNMLYRERHCPAEEEKLHCLIPAPKGYVTPFPWPKSRDYVPFANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLAAVIPIKNGTVRTALDTGCGVASWGAYLLSRNVLAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGGNDGTYLMEVDRVLRPGGYWVLSGPPINWKTNYKSWQRPRDELEEEQRKIEDIAKLLCWEKKFEKGEIAIWQKRVNTDSCPDRQDDSRDIFCKSPVSDDVWYEKMETCITPYPTVESSDEVAGGELKTFPSRLYAVPPRISSGSIPGISVEAYHEDNNKWKRHVKAYKKINKLIDTGRYRNIMDMNAGLGSFAASLESSKLWVMNVVPTIAEKNTLGAIYERGLIGIYHDWCEAFSTYPRTYDLIHAHAIFSLYKDKCNMEDILLEMDRILRPEGAVIFRDEVDVLVKVKKMIGGMRWDAKMVDHEDGPLVAEKILVAVKQYWVVGGNNSTSH | 936 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5848056 | 5857372 | + | CmaCh05G008560.1 | Cma05g00856 | 294974 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00856 | 936 | PANTHER | SAM-DEPENDENT METHYLTRANSFERASE | 347 | 932 | IPR004159 | GO:0008168 | |
| Cma05g00856 | 936 | CDD | Orc6_mid | 99 | 195 | - | - | |
| Cma05g00856 | 936 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 769 | 906 | IPR029063 | - | |
| Cma05g00856 | 936 | PANTHER | METHYLTRANSFERASE PMT2-RELATED | 347 | 932 | - | - | |
| Cma05g00856 | 936 | Pfam | Origin recognition complex subunit 6 (ORC6) | 3 | 99 | IPR008721 | GO:0003677|GO:0005664|GO:0006260 | |
| Cma05g00856 | 936 | Gene3D | - | 98 | 195 | - | - | |
| Cma05g00856 | 936 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 435 | 656 | IPR029063 | - | |
| Cma05g00856 | 936 | Gene3D | Vaccinia Virus protein VP39 | 481 | 670 | IPR029063 | - | |
| Cma05g00856 | 936 | MobiDBLite | consensus disorder prediction | 202 | 249 | - | - | |
| Cma05g00856 | 936 | Pfam | Putative S-adenosyl-L-methionine-dependent methyltransferase | 413 | 923 | IPR004159 | GO:0008168 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00856 | Cma-Chr5:5848056 | Cma16g01085 | Cma-Chr16:8337197 | 0 | dispersed | |
| Cma01g00470 | Cma-Chr1:2380365 | Cma05g00856 | Cma-Chr5:5848056 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00856 | - | - | csv:101204603 | 1182.16 |