Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00857 ATGGAGCATGGAGATACTGTGAGGAAGGCCAAGGGCGTGGTCTCCCATCCTTCAAGTTCCTACAAACAAATCATAATAGTCGCGGCCATTGCAGCCGGACTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTCACACCTTACGTACAACAACTGGGAGTTCCACGCACATGGTCGTCTTTCATATGGCTTTGCGGCCCAATGTCAGGCCTCATTGTGCAGCCCACTGTGGGGTACTACAGCGACCGTTGCACCTCTAGGTTTGGGCGTCGTCGGCCCTTCATTGTAGCTGGGGCTGTCTTTGTGGCGGTTGCCGTTTTCCTCATTGGCTTCGCTGCAGACATTGGGCATTCCGCGGGGGACGAGCTTGCCAAAGGCACAAAGCCAAGGGCTGTGGCCATATTCGTGGTTGGATTCTGGGTTCTCGATGTGGCTAACAACATGCTGCAAGGCCCTTGTAGGGCCCTGTTGGCAGACATGTCTTGCAACAACCACAAAAAGATGAGAGTGGCGAATGGGCTGTTCTCCTTCTTCTTGGGCGTAGGGAATGTGTTGGGGTACGCAGCTGGGGCCAATAGCCAACTCCATACACTCCTTCCATTCACAATCACCGAAGCATGCGACGGTTATTGCGCCAACCTCAAAACCTGCTTCTTGATAGACATCGTGTTGCTCCTCACGGTTACCACGTTCGCGATGTTGATGGTGGGTGAGAAGCCGTGGGAGCCCCTACACATGGACAAAGAATCAACGCCCTTCTTTGGGCAGTTGATGGGTGCGCTGAAGCAGTTGTCGAGGCCCATGTGGATCCTGATGCTGGTGACAGCCTTGAACTGGGTGGGTTGGTTCCCATTTATAATGTACGACACGGACTGGATGGGTGCGGAGGTGTACGGAGGAAAGCCGAAAGGGAGTCCGGAAGAAGCCAAGTTGTATGAGATGGGTGTTCGAGCAGGGGCGCTGGGGCTGATGATAAACTCCTTTGTGCTTGGGTTATCCTCTTTGGGGATAGAGACAGTGGGCCGTGTTGTAGGAGGGCTCAGGTGGGTGTGGGGAATTGTGAACATTATATTTACGGTTTGTATGGGAGGCATGGTGGTGGTTACAACGGTGGCAGAGCGCTGGAGGTCGGTTCATGGGTTGGCCCATCCGCCTCCCAACGTCAGGGCTGGAGCCTTCTCAATCTTTGCAGTGTTGGGGATTCCACTTTCGGTCACTTTCAGCGTTCCCTTTGCGCTGGCATCCATCTTTTCTTCAAATTCCAACGCGGGGCAAGGGCTGTCCTTGGGAATCCTGAACCTGTTCATAGTGATCCCACAGCTTTTAGTGTCGGCAGTTAGTGGGCCCTTAGACGCAGCCTTCGGGGGAGGGAACTTACCGGCGTTCGTGATGGGTGGAATTGCGGCCTTTGCAAGCGCCATGTGTGCCATCTTCCTGCTCCCCGACCCACCACCTCAGTCTGATGTCTCCTTAACAATGGGCGGTGGCCATTGA 1494 54.48 MEHGDTVRKAKGVVSHPSSSYKQIIIVAAIAAGLQFGWALQLSLLTPYVQQLGVPRTWSSFIWLCGPMSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGAVFVAVAVFLIGFAADIGHSAGDELAKGTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCNNHKKMRVANGLFSFFLGVGNVLGYAAGANSQLHTLLPFTITEACDGYCANLKTCFLIDIVLLLTVTTFAMLMVGEKPWEPLHMDKESTPFFGQLMGALKQLSRPMWILMLVTALNWVGWFPFIMYDTDWMGAEVYGGKPKGSPEEAKLYEMGVRAGALGLMINSFVLGLSSLGIETVGRVVGGLRWVWGIVNIIFTVCMGGMVVVTTVAERWRSVHGLAHPPPNVRAGAFSIFAVLGIPLSVTFSVPFALASIFSSNSNAGQGLSLGILNLFIVIPQLLVSAVSGPLDAAFGGGNLPAFVMGGIAAFASAMCAIFLLPDPPPQSDVSLTMGGGH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5884668 5886312 + CmaCh05G008570.1 Cma05g00857 294975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00857 497 Pfam MFS/sugar transport protein 36 281 - -
Cma05g00857 497 CDD MFS_SLC45_SUC 33 478 - -
Cma05g00857 497 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 20 490 - -
Cma05g00857 497 PANTHER SUGAR TRANSPORTER 20 490 - -
Cma05g00857 497 SUPERFAMILY MFS general substrate transporter 22 486 IPR036259 -
Cma05g00857 497 TIGRFAM GPH_sucrose: sucrose/H+ symporter 21 484 IPR005989 GO:0005887|GO:0008515|GO:0015770
Cma05g00857 497 Gene3D MFS general substrate transporter like domains 17 486 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00857 Cma-Chr5:5884668 Cma12g00228 Cma-Chr12:1123406 3.31E-156 dispersed
Cma05g00857 Cma-Chr5:5884668 Cma05g00865 Cma-Chr5:6014662 0 proximal
Cma01g00472 Cma-Chr1:2388595 Cma05g00857 Cma-Chr5:5884668 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00857 K15378 - csv:116401998 812.372