Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00862 ATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTGAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGTTATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAGAAGCCACAAGTCTGAAACCATTCCCCAACTCAAGCTGGAAGACTTGAAACAGATGCAGATAAAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACACGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGCTGCAGGAGCAAATAGAAGTACAAAGGCATTTGCAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGGGTGTTGAGGAAGGCAGAAGAGACAATTGCAGGGTACGGATGTTGTTCAGAAGCACTGGAAGAGCTCTCTCAATTGGCTTCAATGGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAAAAAGTTATGAGAATAATCAAGAGGAATTCAGAATGATCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGAATTGGATCAGAGTTGATTGAGTTTCTTTGA 732 43.31 MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRVMGITGLRLYHLKSHLQKFRLGRSHKSETIPQLKLEDLKQMQIKGGKLDVENSDVGQNHNTKERKKIWDVMEMQMEVEKRLQEQIEVQRHLQLRIEAQGKYLKRVLRKAEETIAGYGCCSEALEELSQLASMVSSGCESSCLSEQSSSVSEGDCKRLTMQKSYENNQEEFRMIDLNDAATGSGSGIGSELIEFL 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5961490 5963138 + CmaCh05G008620.1 Cma05g00862 294980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00862 243 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cma05g00862 243 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677
Cma05g00862 243 Pfam MYB-CC type transfactor, LHEQLE motif 118 160 IPR025756 -
Cma05g00862 243 Gene3D - 15 73 - -
Cma05g00862 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 210 IPR044848 GO:0003700
Cma05g00862 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL8 4 210 - -
Cma05g00862 243 Pfam Myb-like DNA-binding domain 18 67 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00862 Cma-Chr5:5961490 Cma06g01737 Cma-Chr6:10622119 6.90E-55 dispersed
Cma01g00477 Cma-Chr1:2417803 Cma05g00862 Cma-Chr5:5961490 4.64E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35086 PF14379 Myb_CC_LHEQLE 1.90E-18 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00862 - - cmos:111450554 431.795