Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00862 | ATGCAGAATCATCACCACATCAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTCCGGAGCTTCATCACAGATTTGAGGAGGCTGTGAATCATCTCGGTGGAGCACATAAGGCCACTCCTAAGAGCTTGATGAGAGTTATGGGTATCACTGGGCTTAGGCTGTACCACCTCAAGAGCCATTTACAGAAATTTAGATTGGGAAGAAGCCACAAGTCTGAAACCATTCCCCAACTCAAGCTGGAAGACTTGAAACAGATGCAGATAAAAGGTGGGAAATTGGACGTGGAAAACAGCGATGTGGGTCAAAATCATAACACGAAAGAGAGAAAGAAGATATGGGATGTTATGGAAATGCAAATGGAAGTAGAGAAGAGGCTGCAGGAGCAAATAGAAGTACAAAGGCATTTGCAGCTGAGAATTGAAGCACAAGGGAAGTACTTAAAGAGGGTGTTGAGGAAGGCAGAAGAGACAATTGCAGGGTACGGATGTTGTTCAGAAGCACTGGAAGAGCTCTCTCAATTGGCTTCAATGGTGAGCTCTGGATGTGAGAGCTCATGTTTGTCAGAACAGAGCAGCTCTGTTTCTGAGGGAGATTGTAAGAGATTAACAATGCAAAAAAGTTATGAGAATAATCAAGAGGAATTCAGAATGATCGACTTGAATGATGCAGCAACTGGAAGTGGAAGTGGAATTGGATCAGAGTTGATTGAGTTTCTTTGA | 732 | 43.31 | MQNHHHINLVLSTDAKPRLKWTPELHHRFEEAVNHLGGAHKATPKSLMRVMGITGLRLYHLKSHLQKFRLGRSHKSETIPQLKLEDLKQMQIKGGKLDVENSDVGQNHNTKERKKIWDVMEMQMEVEKRLQEQIEVQRHLQLRIEAQGKYLKRVLRKAEETIAGYGCCSEALEELSQLASMVSSGCESSCLSEQSSSVSEGDCKRLTMQKSYENNQEEFRMIDLNDAATGSGSGIGSELIEFL | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5961490 | 5963138 | + | CmaCh05G008620.1 | Cma05g00862 | 294980 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00862 | 243 | SUPERFAMILY | Homeodomain-like | 15 | 71 | IPR009057 | - | |
Cma05g00862 | 243 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 16 | 71 | IPR006447 | GO:0003677 | |
Cma05g00862 | 243 | Pfam | MYB-CC type transfactor, LHEQLE motif | 118 | 160 | IPR025756 | - | |
Cma05g00862 | 243 | Gene3D | - | 15 | 73 | - | - | |
Cma05g00862 | 243 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 4 | 210 | IPR044848 | GO:0003700 | |
Cma05g00862 | 243 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL8 | 4 | 210 | - | - | |
Cma05g00862 | 243 | Pfam | Myb-like DNA-binding domain | 18 | 67 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00862 | Cma-Chr5:5961490 | Cma06g01737 | Cma-Chr6:10622119 | 6.90E-55 | dispersed | |
Cma01g00477 | Cma-Chr1:2417803 | Cma05g00862 | Cma-Chr5:5961490 | 4.64E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35086 | PF14379 | Myb_CC_LHEQLE | 1.90E-18 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00862 | - | - | cmos:111450554 | 431.795 |