Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00869 ATGGGGTCCTGCTTGTCTGCGGAAAGCAGGGGCCCCATTCCTGGTTCCCCAAACACTCCGGCTAAGCACCGTCGTAGCAAGAACAGTTCTAAGAGGCGAAATGTTTCTCGAAATTCCTCCTTTGGGGATTCGTCACTTCATCGGATCCCCGGCAGGCTGTTCGGCAATGGTGCCACTGATGTCGCTTCTCTGTTCACGCAGCAGGGAAAGAAAGGGACCAATCAAGATGCCATGATTGTTTGGGAGAATTTTGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGCCATATGGTTGCGAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTCAACTTGACCACCGATGATGTTCATAGAGAGATCAACCTTAATGCAGCAAGTGTAAACTCAGACGAAACAACCTCCTTTTTGTCTGCTAATGAGGAGTCCCGGGCCTCCACCGATCTCGATGGAACGGAAAAGCAACCTGAAATTTTCCTTACTTTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAGCTCAGAATGCACCAAACCATAGATTGCATCTGTAGTGGCACTACAGCAGTGACTTTCGTTAAACAGGGTCGGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCCGTTTTGGGTATGAGAGATAAAGATGACTCTCTTGTTGCAATTCAATTGACTGTGGATCTTAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAAGTGTAAAGGTCGTGTCTTTGCTCTCCAAGACGAACCTGATGTTGCTCGAGTTTGGCTTCCAGACAGCAACTCTCCTGGACTTGCCATGGCGCGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCGCTGTACCTGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTTCAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTCGTAGATATCGTTGCATCAGCTCGAAAACGTACTACTGCAGCTCGAACTCTGGTGGAGACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCTAAGATGGATGACTGTGCGGTCATTTGCCTCTTCCTTGACTCAAACTCCAGCAATCCATCTTCTGCTTCCAATAACAAACTGGATGAGCAACAAAGCTTAGTAGATCAAGTCAGTACAGCAGTTGTGGTTGAAAATCTCTGTGGCCCAAATGGTCTGAATCGTTCAGGAACCATCGAAACGAGCAAGAACATTTTGCAGGATGGAAGCGAAGAAGAAGAAGAAGATGAATGGAAGGAGGAAGAACAGTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGGGTCTCGCGCGTAAACACTCTGGTAAACCTGCCGAGATTCGATCCTGGAAAAGAAGATAAGGCCAGCCGGAAGTGA 1461 46.95 MGSCLSAESRGPIPGSPNTPAKHRRSKNSSKRRNVSRNSSFGDSSLHRIPGRLFGNGATDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREINLNAASVNSDETTSFLSANEESRASTDLDGTEKQPEIFLTLKESFLKAFRVMDWELRMHQTIDCICSGTTAVTFVKQGRDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRKCKGRVFALQDEPDVARVWLPDSNSPGLAMARAFGDFCLKDFGLIAVPEISYRRLTEKDEFIVLASDGIWDVLSNKEVVDIVASARKRTTAARTLVETAIKAWKHKYPTSKMDDCAVICLFLDSNSSNPSSASNNKLDEQQSLVDQVSTAVVVENLCGPNGLNRSGTIETSKNILQDGSEEEEEDEWKEEEQSEMGIEWSALEGVSRVNTLVNLPRFDPGKEDKASRK 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6071902 6075224 - CmaCh05G008690.1 Cma05g00869 294987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00869 486 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 470 - -
Cma05g00869 486 ProSiteProfiles PPM-type phosphatase domain profile. 61 380 IPR001932 -
Cma05g00869 486 SUPERFAMILY PP2C-like 61 381 IPR036457 -
Cma05g00869 486 MobiDBLite consensus disorder prediction 1 48 - -
Cma05g00869 486 MobiDBLite consensus disorder prediction 425 451 - -
Cma05g00869 486 Gene3D - 58 382 IPR036457 -
Cma05g00869 486 PANTHER ALPHABET, ISOFORM E-RELATED 1 470 - -
Cma05g00869 486 MobiDBLite consensus disorder prediction 436 450 - -
Cma05g00869 486 CDD PP2Cc 61 380 IPR001932 -
Cma05g00869 486 Pfam Protein phosphatase 2C 176 359 IPR001932 -
Cma05g00869 486 SMART PP2C_4 51 378 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00869 Cma-Chr5:6071902 Cma11g00930 Cma-Chr11:4884425 1.21E-166 dispersed
Cma01g01746 Cma-Chr1:11798990 Cma05g00869 Cma-Chr5:6071902 9.38E-100 transposed
Cma01g00483 Cma-Chr1:2450184 Cma05g00869 Cma-Chr5:6071902 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00869 - - csv:101222150 799.66