Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00923 | ATGTCGATCTCTTCTTCCGAAGACTGCTTTATTGACTCTCATTTACTCTGTGACGAGGACTCCTCCGATATTTTGTCCGGAGAGTCGCCAGAGTACTCCTCGGACCTTGAATCGCCTGCCAGTAGTGAGGATTCTATTGCCAGTTTCATAGAGGACGAGAGGCACTTCGTTCCTGGGATTGATTACTTGTCGCGCTTTCACTCTCAATCGCTCGATTCCTCCGCAAGAGCTGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAATTACTTGGATCGATTCCTTTATTCTCGCCGCTTGCCGGAAACAAATGGGTGGCCATTGCAGCTTCTATCAGTGGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCACTTGTTCCTTCGTTCCTGGATCTCCAGATCGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTACTTGCAACATTGGATTGGCGGCTCCGATCCGTAACCCCCTTCAGCTTCATCGGATTCTTCGCCTACAAAGTCGATCCCACCGGAACATTTTCCAGTTTTCTCATCTCACGCTCCACAGAAATCATTCTCTCCAATATTCGAGACGCTAGCTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCAGCCTTACTTTGTGCGGCAAATGAAATACCCAATTTGACCCTTCTCAATCCTGAACATGCAGAGTCTTGGTGCAATGGACTCAGTAAAGATAAAATTGTTGGGTGTTATCGACTAATGCAGCCATCAACATCAGAGAGTGGTCGTAGAAAGCCCCCGAAAGTGATACCGCAACTCCGAGTGAGAATCCGAGCTGGGTTGAGGTACAGCAACTCATCGTCATCGTCGTCATCAACAAGGTTAGGTTATAAAAGGAGGAAGTTGAATAATTGCTTGTGGGTAGAAGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGAGGAATAA | 1011 | 45.99 | MSISSSEDCFIDSHLLCDEDSSDILSGESPEYSSDLESPASSEDSIASFIEDERHFVPGIDYLSRFHSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPLVPSFLDLQIEGAKYIFEPRTIRRMELLVLATLDWRLRSVTPFSFIGFFAYKVDPTGTFSSFLISRSTEIILSNIRDASFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKDKIVGCYRLMQPSTSESGRRKPPKVIPQLRVRIRAGLRYSNSSSSSSSTRLGYKRRKLNNCLWVEEDDKENSKFRAEE | 336 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7375401 | 7377644 | + | CmaCh05G009230.1 | Cma05g00923 | 295041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00923 | 336 | CDD | CYCLIN | 76 | 168 | IPR013763 | - | |
| Cma05g00923 | 336 | PANTHER | CYCLINS | 24 | 318 | IPR039361 | - | |
| Cma05g00923 | 336 | MobiDBLite | consensus disorder prediction | 21 | 40 | - | - | |
| Cma05g00923 | 336 | Pfam | Cyclin, C-terminal domain | 178 | 279 | IPR004367 | - | |
| Cma05g00923 | 336 | SMART | cyclin_7 | 81 | 169 | IPR013763 | - | |
| Cma05g00923 | 336 | SUPERFAMILY | Cyclin-like | 39 | 175 | IPR036915 | - | |
| Cma05g00923 | 336 | Gene3D | - | 48 | 239 | - | - | |
| Cma05g00923 | 336 | ProSitePatterns | Cyclins signature. | 76 | 107 | IPR006671 | - | |
| Cma05g00923 | 336 | Pfam | Cyclin, N-terminal domain | 46 | 175 | IPR006671 | - | |
| Cma05g00923 | 336 | Gene3D | - | 59 | 176 | - | - | |
| Cma05g00923 | 336 | MobiDBLite | consensus disorder prediction | 26 | 40 | - | - | |
| Cma05g00923 | 336 | SMART | Cyclin_C_2 | 178 | 306 | IPR004367 | - | |
| Cma05g00923 | 336 | SUPERFAMILY | Cyclin-like | 160 | 272 | IPR036915 | - | |
| Cma05g00923 | 336 | PANTHER | CYCLIN-D1-1 | 24 | 318 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00298 | Cma-Chr4:1480528 | Cma05g00923 | Cma-Chr5:7375401 | 3.15E-155 | dispersed | |
| Cma04g01592 | Cma-Chr4:8051224 | Cma05g00923 | Cma-Chr5:7375401 | 3.54E-144 | dispersed | |
| Cma05g00923 | Cma-Chr5:7375401 | Cma16g00310 | Cma-Chr16:1444756 | 3.64E-62 | dispersed | |
| Cma03g00416 | Cma-Chr3:4480686 | Cma05g00923 | Cma-Chr5:7375401 | 2.18E-27 | transposed | |
| Cma12g00720 | Cma-Chr12:4008137 | Cma05g00923 | Cma-Chr5:7375401 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00923 | K18810 | - | csv:101210686 | 607.06 |