Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00932 ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCTGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTTTCACTACTGCACCAAAATTTTCTCCAAAGTGCCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCGGGCTCTCCGACGGGTTCATTTCCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGTGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTGAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAATCTCAGCGTTCAGAACAATCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACGAGAACAGAAGATAACAGGCGAGCAAATGAAGCGAATCCCAGATATGGCCGTGACTTTGAATGGAGCAGATAG 819 47.62 MLRLQCLSSSLLLPLIPELSPETSSNRRLCRLNSFRPLLTFTTAPKFSPKCQYSWNTQQHQAAFESGSPTGSFPSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDEGKVRKILKVEPLPDGSGRFFNLSVQNNLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSMTRTEDNRRANEANPRYGRDFEWSR 272
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 7543191 7546619 - CmaCh05G009320.1 Cma05g00932 295050
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00932 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 45 272 - -
Cma05g00932 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 272 IPR009044 GO:0003677|GO:0006355
Cma05g00932 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cma05g00932 272 Gene3D Transcriptional Coactivator Pc4; Chain A 80 255 IPR009044 GO:0003677|GO:0006355
Cma05g00932 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 45 272 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00881 Cma-Chr1:4979449 Cma05g00932 Cma-Chr5:7543191 2.78E-52 transposed
Cma12g00715 Cma-Chr12:3975161 Cma05g00932 Cma-Chr5:7543191 7.16E-149 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35091 PF08536 Whirly 1.20E-59 CL0609 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00932 - - mcha:111019296 431.409