Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma05g00932 | ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCTGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTTTCACTACTGCACCAAAATTTTCTCCAAAGTGCCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCGGGCTCTCCGACGGGTTCATTTCCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGTGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTGAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAATCTCAGCGTTCAGAACAATCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACGAGAACAGAAGATAACAGGCGAGCAAATGAAGCGAATCCCAGATATGGCCGTGACTTTGAATGGAGCAGATAG | 819 | 47.62 | MLRLQCLSSSLLLPLIPELSPETSSNRRLCRLNSFRPLLTFTTAPKFSPKCQYSWNTQQHQAAFESGSPTGSFPSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDEGKVRKILKVEPLPDGSGRFFNLSVQNNLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSMTRTEDNRRANEANPRYGRDFEWSR | 272 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7543191 | 7546619 | - | CmaCh05G009320.1 | Cma05g00932 | 295050 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma05g00932 | 272 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC | 45 | 272 | - | - | |
| Cma05g00932 | 272 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 87 | 272 | IPR009044 | GO:0003677|GO:0006355 | |
| Cma05g00932 | 272 | Pfam | Whirly transcription factor | 95 | 229 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 | |
| Cma05g00932 | 272 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 80 | 255 | IPR009044 | GO:0003677|GO:0006355 | |
| Cma05g00932 | 272 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 45 | 272 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00881 | Cma-Chr1:4979449 | Cma05g00932 | Cma-Chr5:7543191 | 2.78E-52 | transposed | |
| Cma12g00715 | Cma-Chr12:3975161 | Cma05g00932 | Cma-Chr5:7543191 | 7.16E-149 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35091 | PF08536 | Whirly | 1.20E-59 | CL0609 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma05g00932 | - | - | mcha:111019296 | 431.409 |