Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00932 ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCTGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTTTCACTACTGCACCAAAATTTTCTCCAAAGTGCCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCGGGCTCTCCGACGGGTTCATTTCCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTGGGCCCACGTGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTGAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAATCTCAGCGTTCAGAACAATCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCATGACGAGAACAGAAGATAACAGGCGAGCAAATGAAGCGAATCCCAGATATGGCCGTGACTTTGAATGGAGCAGATAG 819 47.62 MLRLQCLSSSLLLPLIPELSPETSSNRRLCRLNSFRPLLTFTTAPKFSPKCQYSWNTQQHQAAFESGSPTGSFPSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDEGKVRKILKVEPLPDGSGRFFNLSVQNNLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSMTRTEDNRRANEANPRYGRDFEWSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7543191 7546619 - CmaCh05G009320.1 Cma05g00932 295050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00932 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 45 272 - -
Cma05g00932 272 SUPERFAMILY ssDNA-binding transcriptional regulator domain 87 272 IPR009044 GO:0003677|GO:0006355
Cma05g00932 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cma05g00932 272 Gene3D Transcriptional Coactivator Pc4; Chain A 80 255 IPR009044 GO:0003677|GO:0006355
Cma05g00932 272 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 45 272 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00932 - - - mcha:111019296 431.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00881 Cma-Chr1:4979449 Cma05g00932 Cma-Chr5:7543191 2.78E-52 transposed
Cma12g00715 Cma-Chr12:3975161 Cma05g00932 Cma-Chr5:7543191 7.16E-149 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00715 . 68 274 Whirly Transcription Factor Family AT1G14410 69.5 2.2e-86 316.2
Cma05g00932 . 75 272 Whirly Transcription Factor Family AT1G14410 73.2 5.4e-85 311.6
Cma01g00881 . 56 213 Whirly Transcription Factor Family AT1G71260 65.2 1.9e-57 219.9
Cma12g00715 . 46 274 Whirly Transcription Factor Family AT2G02740 67.0 1.7e-86 316.6
Cma05g00932 . 82 272 Whirly Transcription Factor Family AT2G02740 76.6 1.9e-85 313.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35091 PF08536 Whirly 1.20E-59 CL0609 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00932 Cma_Chr05 FPKM 1.772364 1.957645 2.51603 2.322359 29.172525 28.858255 28.879124 5.629181 6.021812 6.375356