Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00942 ATGGCCGGGTTTAGAATCTTGTTTGTCTTCTCGTTGTACTTTTTTGCAGCATATGCCAGTGTCGATGTCGATGACCATGATGAATACTGGCTCACTCGTGCTAATGAGGCTAAGGAAGTAGCCAAAGATGCCTACAATCCTAACCCAGAAAGTGTCACCGAGCATTTGAACGTCGCCGTCCGTCTGGCGATGGTGGGTGACAATAGTACAAGAAGGAGTCTCAATAAATATAAAGGACCATGTTTGAAGACAAACCCGATCGATAGATGCTGGAGATGCGATAAAAATTGGGCTAACAATCGAAAGAAGCTAGCTGAGTGCCCGTTAGGGTTTGGCCACCAAACCATCGGTGGAAAGAGGGGACGCATCTATGTGGTGACCGACGCATCTGATGATAACTTGGTTGACCCTAAGCTCGGAACCCTCCGCTATGGCGTGATTCAAAAAGGTCCACTTTGGATCATTTTTGGACGTAGCATGGTCATCCGGCTAGCCCAAGAGCTGATGATCTCGAGCGACAAGACCATCGATGCTCGTGGCTTTAATGTTCACATTGCCTATGGCGCTGGCCTCACCATTCAATTCGCCCACAATGTTATCATCCATGGCCTTCACATCCATAATATCATCTCCAAATCAGGTGGCTATATTAGAGATTCCGTTGATCATTATGGATTTCGAACACAAAGCGATGGCGATGGTATCTCCATCTTCGGCTCTTCTCATGTATGGATCGACCATGTTTCCATGTATGCATGCCAAGATGGCCTCATCGATGCCATCATGGGTTCCACCGGCATCACCATTTCCAATAGTCATTTCACTCATCACAACGAGGCGATGTTATTTGGAGCAAGCGATAGCTACAAAGAGGACGAGATCATGCAAATAACGCTCGCATTCAACCACTTTGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTAAACAATGACTACACCCATTGGCTAATGTATGCCATCGGAGGTAGCCAGCATCCAACCATTGTGAGCCAAGGCAACCGATTCATTGCGCCACAGAACATCAATGCAAAAACGATAACAAAGAGAGAGTATGCAGATGAGAGTGAGTGGAAGAAGTGGTCGTGGAGATCGGAAGGGGATTTGTTGATGAATGGTGCGGTGTTTGTTGGGTCGGGAGACCAAACCAAAGGGAAGAAGAAGGACTTGTCTAGATATGACATGATTTCGTACAAGCCAGGGTCTTATGTGAAGAGACTTGTACGCTTCGCTGGAACACTTGAATGTCGTGTAGGCAAACCATGCTAG 1311 46.91 MAGFRILFVFSLYFFAAYASVDVDDHDEYWLTRANEAKEVAKDAYNPNPESVTEHLNVAVRLAMVGDNSTRRSLNKYKGPCLKTNPIDRCWRCDKNWANNRKKLAECPLGFGHQTIGGKRGRIYVVTDASDDNLVDPKLGTLRYGVIQKGPLWIIFGRSMVIRLAQELMISSDKTIDARGFNVHIAYGAGLTIQFAHNVIIHGLHIHNIISKSGGYIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHVSMYACQDGLIDAIMGSTGITISNSHFTHHNEAMLFGASDSYKEDEIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPQNINAKTITKREYADESEWKKWSWRSEGDLLMNGAVFVGSGDQTKGKKKDLSRYDMISYKPGSYVKRLVRFAGTLECRVGKPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7598769 7600564 + CmaCh05G009420.1 Cma05g00942 295060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00942 436 SUPERFAMILY Pectin lyase-like 75 430 IPR011050 -
Cma05g00942 436 Gene3D - 84 429 IPR012334 -
Cma05g00942 436 PANTHER PECTATE LYASE 18-RELATED 8 436 IPR045032 GO:0030570
Cma05g00942 436 Pfam Pectate lyase 191 350 IPR002022 -
Cma05g00942 436 Pfam Pectate lyase, N terminus 24 74 IPR007524 GO:0030570
Cma05g00942 436 SMART amb_all 159 356 IPR002022 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 107 124 IPR018082 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 131 156 IPR018082 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 167 183 IPR018082 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 231 252 IPR018082 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 333 352 IPR018082 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 375 399 IPR018082 -
Cma05g00942 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Cma05g00942 436 PANTHER PECTATE LYASE 8 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00942 Cma-Chr5:7598769 Cma11g01041 Cma-Chr11:5702559 0 dispersed
Cma12g00701 Cma-Chr12:3828950 Cma05g00942 Cma-Chr5:7598769 0 wgd
Cma04g01634 Cma-Chr4:8245667 Cma05g00942 Cma-Chr5:7598769 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00942 K01728 - csv:101217922 731.095