Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00948 ATGTCTACCTCTAGACCTAGTCAGTCTTCTAGCAACTCTGGGCGGTCCAGACATAGCACTAGAATTATTGCTCAAACATCTGTTGATGCAAAGCTGCAAGCTGATTTCGAGGAATCTGGGAATTCGTTCGACTACTCAAGTTCAGTGCGTGTCACTAGTGATGTTAGCGGAGATCAACAGCCTAGGTCAGACAAAGTTACTACAGCTTATCTCCATCATATTCAGAAAGGCAAACTTATCCAACCATTTGGTTGCTTGTTGGCTTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGCCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGCACAGATGTAAGGACTATTTTCACCGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGAGAGGTTACTCTTCTTAATCCTATCCTGGTGCATTGCAAGACTTCTGGAAAACCCTTCTATGCAATTGTTCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGGTCCAGTGACTGCAGCTGGAGCTCTACAGTCATATAAACTTGCCGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGAAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATCGAGTTATGGCTTATAAATTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTCAGCCATATCTTGGTTTGCATTATCCAGCAACTGACATTCCTCAAGCTGCACGTTTTTTGTTCATGAAAAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGTGGTTCAACTTTAAGGGCTCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATAGCCTCTTTGGTTATGGCAGTTGTAGTTAATGAAGGGGATGAAGAAAGTGAAGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGCTTGGTAGTATGTCATAATTTAAGTCCCAGATTTGTTCCGTTTCCTCTTAGGTATGCTTGTGAGTTCCTAGCTCAAGTATTTGCTATTCATGTGAACAAGGAATTAGAGTTGGAAAATCAAATTATAGAAAAGAATATTCTGCGTACGCAAACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTGTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAAAAAAATTTGGCGATTAGGATTGACACCTAATGACTTCCAGTTGCTGGACATAGCTTCGTGGCTTTCCGAGTATCATATGGATTCAACGGGGTTGAGTACTGACAGTTTGTATGATGCAGGATACCCTGGAGCTATTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGACATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGATGGGGTGGAGCAAAGCATGAACATGGTCAAAAGGATGATGCCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCCTGGAAGGACTATGAGATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTTAAGGATACAGATGCAACTGAAATAAATAGAAAATCAATTCAAACAACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCCGGTTAATCGAGACAGCTACTGTACCGATTTTAGCTGTTGATTTAGATGGGTTAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTGCCTGTGGATAAAGCTATCGGCAAGCATTTACTTACGTTAGTGGAAGATTCATCTGTAGAAGTTGTCAGGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTCGAGATCAAGACACATGGTTCTCACATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTCGTGGGTGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGCGATTACAAAGCCATTGTACAAAATCCCAATCCATTGATCCCTCCAATATTTGGATCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGGCGAAATTAACTGGGTGGTCACGTGAAGAAGTAATCGATAAGATGCTTTTGGGAGAGGTTTTTGGTGTTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAACCTTGGGATTGTCTTGAACAATGCCATGTGTGGTCAAGATCCTGAAAAGGCTTCCTTTGGTTTCTTAGCTCGGAACGGGATGTACGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAAAGATGGCTCGGTTACAGGGTTCTTTTGCTTTTTGCAGCTTCCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGCTTATGTGAGCAAACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGACAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAGCGCACCGAGTTGGGAGTAGAACAAAAAGAACTTCTGCGTACTAGCGGACTCTGTCAAAAGCAGATCTCCAAGGTTCTCGATGAGTCAGACATCGATAAAATTATTGATGGGTTTATTGATTTAGAAATGGACGAGTTTACATTGCATGAAGTATTGATGGTATCAATTAGTCAAGTGATGCTAAAGATTAAAGGAAAGGGTATCCAGATAGTTAATGAGACTCCAGAAGAGGCTATGTCCGAGACCTTATATGGAGATAGTTTAAGGCTTCAACAAGTCTTGGCGAACTTTCTATTGATATCAGTTAGTTATGCGCCTTCAGGAGGCCAACTAACAATTTCAACCAATGTGACCAAGAATCAATTAGGAAAGTCGGTCCATCTGGTGCATTTGGAGTTCAGGATAACATATGCTGGAGGAGGTATACCGGAGTCGTTGCTGAACGAGATGTTTGGAAGTGAGGAGGACACGTCCGAAGAGGGTTTCAGTCTGCTCATCAGTAGAAAGCTGGTGAAGCTGATGAATGGAGATGTACGATATATGAGGGAAGCCGGTAAGTCGAGCTTCATCATAACTGTTGAGCTTGCTGCAGCTCACAAGGCAAGGACAACGTAG 3375 41.51 MSTSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVTSDVSGDQQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEGPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLQPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEESEGPALQQQKRKRLWGLVVCHNLSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPVGIVSRSPNIMDLVKSDGAALLYKKKIWRLGLTPNDFQLLDIASWLSEYHMDSTGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQKDDARKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQTTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVRKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDKMLLGEVFGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFLARNGMYVECLLCVNKILDKDGSVTGFFCFLQLPSHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGVEQKELLRTSGLCQKQISKVLDESDIDKIIDGFIDLEMDEFTLHEVLMVSISQVMLKIKGKGIQIVNETPEEAMSETLYGDSLRLQQVLANFLLISVSYAPSGGQLTISTNVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDTSEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARTT 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7645389 7651777 - CmaCh05G009480.1 Cma05g00948 295066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00948 1124 SMART gaf_1 218 410 IPR003018 GO:0005515
Cma05g00948 1124 Pfam PAS fold 69 185 IPR013654 GO:0006355
Cma05g00948 1124 Gene3D PAS domain 74 321 - -
Cma05g00948 1124 SUPERFAMILY GAF domain-like 198 397 - -
Cma05g00948 1124 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Cma05g00948 1124 MobiDBLite consensus disorder prediction 39 64 - -
Cma05g00948 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1115 IPR003594 -
Cma05g00948 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 952 1112 IPR036890 -
Cma05g00948 1124 SMART HisKA_10 893 954 IPR003661 GO:0000155|GO:0007165
Cma05g00948 1124 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Cma05g00948 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Cma05g00948 1124 ProSiteProfiles Histidine kinase domain profile. 900 1119 IPR005467 -
Cma05g00948 1124 TIGRFAM sensory_box: PAS domain S-box protein 623 739 IPR000014 -
Cma05g00948 1124 CDD HATPase_Phy-like 1004 1115 IPR044767 -
Cma05g00948 1124 Pfam PAS fold 619 733 IPR013767 GO:0006355
Cma05g00948 1124 Pfam PAS fold 749 871 IPR013767 GO:0006355
Cma05g00948 1124 SMART pas_2 748 817 IPR000014 -
Cma05g00948 1124 SMART pas_2 618 684 IPR000014 -
Cma05g00948 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Cma05g00948 1124 PANTHER PHYTOCHROME A 1 1119 - -
Cma05g00948 1124 Gene3D - 405 578 IPR043150 -
Cma05g00948 1124 SMART HKATPase_4 1005 1117 IPR003594 -
Cma05g00948 1124 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Cma05g00948 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Cma05g00948 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Cma05g00948 1124 Pfam GAF domain 219 400 IPR003018 GO:0005515
Cma05g00948 1124 MobiDBLite consensus disorder prediction 1 24 - -
Cma05g00948 1124 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1119 - -
Cma05g00948 1124 Gene3D - 199 561 IPR029016 -
Cma05g00948 1124 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Cma05g00948 1124 Coils Coil 397 417 - -
Cma05g00948 1124 CDD PAS 627 733 IPR000014 -
Cma05g00948 1124 CDD PAS 760 871 IPR000014 -
Cma05g00948 1124 Gene3D - 961 1123 IPR036890 -
Cma05g00948 1124 SUPERFAMILY GAF domain-like 408 585 - -
Cma05g00948 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Cma05g00948 1124 Gene3D PAS domain 611 748 - -
Cma05g00948 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cma05g00948 1124 Gene3D PAS domain 763 875 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00948 Cma-Chr5:7645389 Cma06g01564 Cma-Chr6:9793752 0 dispersed
Cma19g00854 Cma-Chr19:8014444 Cma05g00948 Cma-Chr5:7645389 0 transposed
Cma12g00705 Cma-Chr12:3888331 Cma05g00948 Cma-Chr5:7645389 0 wgd
Cma12g00705 Cma-Chr12:3888331 Cma05g00948 Cma-Chr5:7645389 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00948 K12120 - csv:101208491 2081.99