Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00958 ATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACTACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATTCAGGGAGATCTAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCGCCTATATCTTATGGACGCTTAAGACCGCCTGCAGTGTATGTTGGAGGCATGCAACCCAATAGGGGGAATTATTTTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCATATCAGCAGGGACTTGCATATCCTCCTTACGGTTATGCTACTTATGGACCGGAGTACGTCTACCCGCAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTACAGATTTATGGGGTGCCTGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACGGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACACAATGCCAAGTCCTCAGATCATGCAGTTTGGTGGACCTAATGTCAACCCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGCAATGCCTTATCATAAAAATCTAGAGGAAGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGCGATAGCTAA 906 47.13 MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNPLTSSPMPTIQAPYPSAMPYHKNLEEGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISDS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7751193 7756811 + CmaCh05G009580.1 Cma05g00958 295076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00958 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Cma05g00958 301 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 259 - -
Cma05g00958 301 SMART rrm1_1 33 105 IPR000504 GO:0003723
Cma05g00958 301 PANTHER BOULE-RELATED 1 259 IPR037366 GO:0003729
Cma05g00958 301 Gene3D - 10 120 IPR012677 -
Cma05g00958 301 CDD RRM_RBM24_RBM38_like 32 107 - -
Cma05g00958 301 SUPERFAMILY RNA-binding domain, RBD 31 143 IPR035979 GO:0003676
Cma05g00958 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 89 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00958 - - - csv:101211023 478.404
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00958 Cma12g00695 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00883 Cma-Chr1:5074784 Cma05g00958 Cma-Chr5:7751193 2.14E-55 dispersed
Cma01g01611 Cma-Chr1:11098039 Cma05g00958 Cma-Chr5:7751193 9.75E-51 dispersed
Cma05g00958 Cma-Chr5:7751193 Cma09g01203 Cma-Chr9:7904606 4.97E-54 dispersed
Cma12g00695 Cma-Chr12:3766593 Cma05g00958 Cma-Chr5:7751193 1.20E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g44 . . . . . . . . Cmo05g00978 Cmo12g00631 . . . Car12g00668 . . Cpe07g00603 . . . . . . . Cla08g00924 Cam08g1369 Cec08g0952 Cco08g1071 Clacu08g1077 . Cre08g0861 . . . . . . . Cme03g01324 Blo17g00909 Blo18g00730 . Bda01g01575 Bpe02g01768 . Bma01g00691 . . . . Cma12g00695 Cma05g00958 Car05g00841 . Cpe11g00771 . . . . . . . . . . . . . . . Lsi08g00767 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006014 1 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00958 Cma_Chr05 FPKM 12.64973 12.575044 14.352596 13.329606 13.987309 11.219506 13.114175 15.753516 16.469833 18.681253