Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00961 ATGTCGGGATCTGAAGCTGGTGTGATGACCAGTAGAGAATCCTTCAATGTCGCCGTTCAAAATAGTTCGTTACAGTCGCAGCCGGCGGCCCAAAATATGCGATTATCCTTCAGTGCCGATGGCACAGCCGTCTACAAGCCTGTGACTGTGACTCCGACTCCGACTCCGACTCCGACTCCTTCAACTTTACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAATGCCGGTAAGGAGGGATCGGCTGGTGGAGGGTCGATACTGCCTCATGATTTGAATATAAACTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGGGGAAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTGGGTTCTGGGCAGCCATCAAGAAGTGGAGCTTCTGAAGGAGGATTGGGCTCACCAAATTCATTGAAAAAAAGTAAAGGCAGGCCATCTGGTTCTAAGAAAAAGCGACAATTGGAAGCTTTGGGACCGGCTGGTTTTGGATTCACTCCACATGTTATCGATGTGAAAGCTGGAGAGGATATATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGGGCTATTTGTATCCTTTCAGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGGTTTGAAATTTTGTCACTTTCAGGTTCATTTCTCCTCTCCGACAATGGTGGTCAGAGAAGCAGAGCTGGTGGTTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGCGTCGCGGGTCTTCTTACAGCTTCATCTCCTGTTCAGGTGGTAGTGGGAAGTTTCATAGTCGACAGCAACAAGGAACCAAAGCCAGCCCGCCAAACTGAACCCACAACAGCCTCGCCAATGCTAAACCAAGTCGCCTTTGGTTACTTGACCGGAGGAGCCAGTAGTCCATCGCACGGGACGCTGAGCGAGTCTTCTGGTGGCGGACCTGGCAGCCCCCTCAACAACAGCTCAGGAGCCTGCAACAACAGCATCCATCCACAGACAATGTCCGGCATGCCATGGAATTGTATTTCTAATGTCTTTTGGTCTGTCAAGAGCAAGCTAATTTTTGGTAAAAAAAATGTTCTGTCTTGTCGTGATACTAGCAAAATCGATTAA 1179 48.94 MSGSEAGVMTSRESFNVAVQNSSLQSQPAAQNMRLSFSADGTAVYKPVTVTPTPTPTPTPSTLPSYQSSMAGVSGNAGKEGSAGGGSILPHDLNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGQPSRSGASEGGLGSPNSLKKSKGRPSGSKKKRQLEALGPAGFGFTPHVIDVKAGEDISSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSDNGGQRSRAGGLSVSLSGPDGRVLGGGVAGLLTASSPVQVVVGSFIVDSNKEPKPARQTEPTTASPMLNQVAFGYLTGGASSPSHGTLSESSGGGPGSPLNNSSGACNNSIHPQTMSGMPWNCISNVFWSVKSKLIFGKKNVLSCRDTSKID 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7769242 7772938 + CmaCh05G009610.1 Cma05g00961 295079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00961 392 CDD DUF296 171 285 IPR005175 -
Cma05g00961 392 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 8 358 - -
Cma05g00961 392 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
Cma05g00961 392 Gene3D - 172 309 - -
Cma05g00961 392 MobiDBLite consensus disorder prediction 321 346 - -
Cma05g00961 392 MobiDBLite consensus disorder prediction 48 157 - -
Cma05g00961 392 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 358 IPR039605 GO:0003680
Cma05g00961 392 MobiDBLite consensus disorder prediction 124 148 - -
Cma05g00961 392 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 286 - -
Cma05g00961 392 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g02039 Cma05g00961 CCT
Cma05g00961 Cma12g00694 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01609 Cma-Chr2:9155140 Cma05g00961 Cma-Chr5:7769242 1.11E-60 dispersed
Cma05g00961 Cma-Chr5:7769242 Cma16g01152 Cma-Chr16:8858536 2.05E-73 dispersed
Cma12g01146 Cma-Chr12:9031493 Cma05g00961 Cma-Chr5:7769242 7.27E-51 dispersed
Cma01g02039 Cma-Chr1:12986204 Cma05g00961 Cma-Chr5:7769242 2.22E-106 wgd
Cma12g00694 Cma-Chr12:3753696 Cma05g00961 Cma-Chr5:7769242 5.70E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00961 - - csv:101211767 499.975