Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma05g00961 | ATGTCGGGATCTGAAGCTGGTGTGATGACCAGTAGAGAATCCTTCAATGTCGCCGTTCAAAATAGTTCGTTACAGTCGCAGCCGGCGGCCCAAAATATGCGATTATCCTTCAGTGCCGATGGCACAGCCGTCTACAAGCCTGTGACTGTGACTCCGACTCCGACTCCGACTCCGACTCCTTCAACTTTACCGTCCTACCAATCCTCCATGGCCGGAGTTTCTGGTAATGCCGGTAAGGAGGGATCGGCTGGTGGAGGGTCGATACTGCCTCATGATTTGAATATAAACTCGGTGGGCAGTGAGCAAATAAAGAGGAAGAGGGGAAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCATTAGCTTTGGGTTCTGGGCAGCCATCAAGAAGTGGAGCTTCTGAAGGAGGATTGGGCTCACCAAATTCATTGAAAAAAAGTAAAGGCAGGCCATCTGGTTCTAAGAAAAAGCGACAATTGGAAGCTTTGGGACCGGCTGGTTTTGGATTCACTCCACATGTTATCGATGTGAAAGCTGGAGAGGATATATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGGGCTATTTGTATCCTTTCAGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAACTGTTACTTATGAGGGGCGGTTTGAAATTTTGTCACTTTCAGGTTCATTTCTCCTCTCCGACAATGGTGGTCAGAGAAGCAGAGCTGGTGGTTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGCGTCGCGGGTCTTCTTACAGCTTCATCTCCTGTTCAGGTGGTAGTGGGAAGTTTCATAGTCGACAGCAACAAGGAACCAAAGCCAGCCCGCCAAACTGAACCCACAACAGCCTCGCCAATGCTAAACCAAGTCGCCTTTGGTTACTTGACCGGAGGAGCCAGTAGTCCATCGCACGGGACGCTGAGCGAGTCTTCTGGTGGCGGACCTGGCAGCCCCCTCAACAACAGCTCAGGAGCCTGCAACAACAGCATCCATCCACAGACAATGTCCGGCATGCCATGGAATTGTATTTCTAATGTCTTTTGGTCTGTCAAGAGCAAGCTAATTTTTGGTAAAAAAAATGTTCTGTCTTGTCGTGATACTAGCAAAATCGATTAA | 1179 | 48.94 | MSGSEAGVMTSRESFNVAVQNSSLQSQPAAQNMRLSFSADGTAVYKPVTVTPTPTPTPTPSTLPSYQSSMAGVSGNAGKEGSAGGGSILPHDLNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGQPSRSGASEGGLGSPNSLKKSKGRPSGSKKKRQLEALGPAGFGFTPHVIDVKAGEDISSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSDNGGQRSRAGGLSVSLSGPDGRVLGGGVAGLLTASSPVQVVVGSFIVDSNKEPKPARQTEPTTASPMLNQVAFGYLTGGASSPSHGTLSESSGGGPGSPLNNSSGACNNSIHPQTMSGMPWNCISNVFWSVKSKLIFGKKNVLSCRDTSKID | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7769242 | 7772938 | + | CmaCh05G009610.1 | Cma05g00961 | 295079 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma05g00961 | 392 | CDD | DUF296 | 171 | 285 | IPR005175 | - | |
Cma05g00961 | 392 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10-LIKE ISOFORM X1 | 8 | 358 | - | - | |
Cma05g00961 | 392 | ProSiteProfiles | PPC domain profile profile. | 166 | 306 | IPR005175 | - | |
Cma05g00961 | 392 | Gene3D | - | 172 | 309 | - | - | |
Cma05g00961 | 392 | MobiDBLite | consensus disorder prediction | 321 | 346 | - | - | |
Cma05g00961 | 392 | MobiDBLite | consensus disorder prediction | 48 | 157 | - | - | |
Cma05g00961 | 392 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 8 | 358 | IPR039605 | GO:0003680 | |
Cma05g00961 | 392 | MobiDBLite | consensus disorder prediction | 124 | 148 | - | - | |
Cma05g00961 | 392 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 170 | 286 | - | - | |
Cma05g00961 | 392 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 172 | 285 | IPR005175 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g02039 | Cma05g00961 | CCT | |
Cma05g00961 | Cma12g00694 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01609 | Cma-Chr2:9155140 | Cma05g00961 | Cma-Chr5:7769242 | 1.11E-60 | dispersed | |
Cma05g00961 | Cma-Chr5:7769242 | Cma16g01152 | Cma-Chr16:8858536 | 2.05E-73 | dispersed | |
Cma12g01146 | Cma-Chr12:9031493 | Cma05g00961 | Cma-Chr5:7769242 | 7.27E-51 | dispersed | |
Cma01g02039 | Cma-Chr1:12986204 | Cma05g00961 | Cma-Chr5:7769242 | 2.22E-106 | wgd | |
Cma12g00694 | Cma-Chr12:3753696 | Cma05g00961 | Cma-Chr5:7769242 | 5.70E-174 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma05g00961 | - | - | csv:101211767 | 499.975 |