Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00964 ATGGACATGGAAGGCCATGGCGATCAGACGAGGCTCAAACCATCAGTTATTTTAACTGGAACAGCCAATGAAGGTAGCTCTGGCCCTCCTATTGGTCTTGTTGATATTGGCGTGAGTGAAGGTGCATACCTCTTCCGCGTTGCAATGCCTGGTGTACGAAAGGATCCAAGTAAGGTAAAATTTGAGATCAAAAGGGATGGTAAGGTTCAGATTGAAGGAGTGATGGCAGGTCCAGGCCTCTTAAAAGAATCATCAGCTATGTACGAGATGAAAGTCCAGCAACTGTGTCCTCCGGGACCTCTTACGATTTCTTTTAAGCTGCCTGGACCAGTCGATCCACGGTTGTCGTCTCCTAGTTTCCGGGCTGATGGCATTCTGGAAGTGGTGGTTATGAAGTCTAAAGCACCTCCAACAGTGTCTGATTCCTACCCACCATTGTGA 441 47.85 MDMEGHGDQTRLKPSVILTGTANEGSSGPPIGLVDIGVSEGAYLFRVAMPGVRKDPSKVKFEIKRDGKVQIEGVMAGPGLLKESSAMYEMKVQQLCPPGPLTISFKLPGPVDPRLSSPSFRADGILEVVVMKSKAPPTVSDSYPPL 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7781704 7782514 + CmaCh05G009640.1 Cma05g00964 295082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00964 146 PANTHER INCREASED DNA METHYLATION 3 1 138 IPR039321 -
Cma05g00964 146 CDD ACD_sHsps-like 35 132 - -
Cma05g00964 146 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 22 146 IPR002068 -
Cma05g00964 146 PANTHER INCREASED DNA METHYLATION 3-LIKE 1 138 - -
Cma05g00964 146 SUPERFAMILY HSP20-like chaperones 32 136 IPR008978 -
Cma05g00964 146 Gene3D - 33 142 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00964 - - - csv:101218704 259.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00964 Cma12g00693 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00964 Cma-Chr5:7781704 Cma12g01083 Cma-Chr12:8550154 4.36E-32 dispersed
Cma12g00693 Cma-Chr12:3749381 Cma05g00964 Cma-Chr5:7781704 6.45E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g50 . . . . . . . . Cmo05g00983 Cmo12g00628 . . . . . . . Bhi04g01208 . . . . . . Cla08g00928 Cam08g1373 Cec08g0956 Cco08g1075 Clacu08g1081 . Cre08g0865 . . . . . . . Cme03g01328 . Blo18g00734 . Bda01g01572 Bpe02g01766 . Bma01g00693 . . . . Cma12g00693 Cma05g00964 Car05g00846 . Cpe11g00775 . . . . . . . . . . . . . . . . . Chy03g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006600 1 5 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00964 Cma_Chr05 FPKM 6.229075 5.224804 8.99996 8.700786 10.586708 10.173805 10.482975 14.860557 13.553846 14.79065