Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00970 ATGGCTGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCTTTTCAGATGAGAGCGGTTTTTACGCGAGATTGCATATTGAACCTATTTATGATTCGTTTTTGTGCCCTTTAACGAAGAAAGTAATGCGGGATCCTGTTACTATAGAAAGTGGGCAAACTTTTGAACGTGCGGCCATTGAGATGTGGTTCAACGAATGCAGGGAGAGTAGAAGGAAGCCTATCTGTCCAATGACACTAAAAGAATTAAGAACCACGGATCTGAATCCCAGTATTGCTCTGCGAAATACTATTGAAGAGTGGACTGCGAGGAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAATGAAACATTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCGAGGCACATCGCACGAAATGCGGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAGAGTTCAGTTTAGAGCTTTGGAAACGCTTAAAATTGTGGTGCAAGAAGACAATGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCGCACGGTAGTAAAGTTCTTGCGTCATGAGCATTCGAAAGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCACGTCCCAAGACTTGTGTGAAAAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCAAGCAGCAGATCTGAGAACATCACCACAGTTGAAAATGCTGAGAGAACATTAGAGAATCTGGAGACATGTGAGAATAATATTCGACAAATGGCTGAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGTGGAGACTTTCTACAAGGGCTCAACAGGTGCTGCCCTGAACTCGGTTGATATGTGGCATGTTCAAAATGGTTTGGTTTGTCCCATGGTTTCTGCTGAGGAAATGAAGTGGAAAAAGAATATCGACCCTGGGCAACGAAAAAGTCCACCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAATGACGACAAACTCTTTGTGGCTCAGACCGTGGGGTCGTCGCTAATTAATATCATGAGAAGTGGTGATAAGCAGGCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATTTCGTCTTTTGAGGCTAGTGCACGAGTTTTGGTACAGCAAGGGATACTGCCACCTCTCGTTCGGGATCTTTTCGCAGTTGGTTCGAACCCACTTCCCATGAAACTAAAAGAAGTATCTGCTACAATTCTTGCCAATGTTGTTAGCTCAGGAAGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACCACACTTGTCTCTGAAGATACTATACATAGCCTGCTACAACTCATTAGCAATACCGGTCCAGCCATTGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACGAGTTCTCCTTCAACTATTTCGAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAATAATCAGCTTGGTTCAATTTATCGAGGCCCCCCAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCGCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACAGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAAGGGATTTAGGCCTCTCCCGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCCACCTTCGAATTTTTCAACTCCGCCAAGGGGGGACTAGGGGAGGCCGATTTTTAACACCATTCCTCGAAGGCCTTGTTCGAATTCTTGCGAGGATTACGTTTATATTGGCTGATGAACCTGATGCTGTTGCATTTTGTCGCAACCGCGATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTGTCAGCCATGGCATTGGAAAATTTATCTTTAGAATCTAAAACTTTGACTCAGTTACCTACGCTTCCAGAACCAGGATTTTGTGCCTCAATTTTCCCATGCTTCAGCTCACAACCAGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACATGCTCTTTGAAGGAAACTTTTTGTCTTTTGGAAGGTAATGCAGTCGACAAATTGGTAGCCCTTTTAGATCACGCAAGTGAGAAGGTCGTCGAGGCAGCACTTGCGGCACTATCTACTTTGTTGGATGACGGGGTCGATGTCGAGAAGGGTGTGAACATTTTGCACAATGTAGATGCGGTTCAGCCTATATTTAACGTGTTGTTTGAAAACCGCTCAGAGAATCTGATGAGACGGGCAGTTTGGACAGCCGAGAGGCTGTTGCGCAACGATGACATTGCTATCGAATTCTCGAACAATCCAAACGTGAATACAGCGCTTGTCGATGCCTTCCAGCATGGTGACTACAAAACAAGGCAAATCGCTGAGCGTGCCTTGAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTGGTACGTAG 2589 44.57 MAESWDGSYDDSGSFSDESGFYARLHIEPIYDSFLCPLTKKVMRDPVTIESGQTFERAAIEMWFNECRESRRKPICPMTLKELRTTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPENETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRRVQFRALETLKIVVQEDNECKEMLAEGDTLRTVVKFLRHEHSKEKEEAVALLYELSTSQDLCEKIGSVNGAILILVGMSSSRSENITTVENAERTLENLETCENNIRQMAEYGRLRPLLTQILEVETFYKGSTGAALNSVDMWHVQNGLVCPMVSAEEMKWKKNIDPGQRKSPPETKHSMAAHLGELVLNNDDKLFVAQTVGSSLINIMRSGDKQAKEAALKALNQISSFEASARVLVQQGILPPLVRDLFAVGSNPLPMKLKEVSATILANVVSSGSDFNSIPVEPNNQTTLVSEDTIHSLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAIISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDEGAFELVHLRIFQLRQGGTRGGRFLTPFLEGLVRILARITFILADEPDAVAFCRNRDLAALFIELLQSNGLDNVQMVSAMALENLSLESKTLTQLPTLPEPGFCASIFPCFSSQPVLTGLCPLHRGTCSLKETFCLLEGNAVDKLVALLDHASEKVVEAALAALSTLLDDGVDVEKGVNILHNVDAVQPIFNVLFENRSENLMRRAVWTAERLLRNDDIAIEFSNNPNVNTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPGT 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7829293 7841996 - CmaCh05G009700.1 Cma05g00970 295088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00970 862 Gene3D - 108 314 IPR011989 -
Cma05g00970 862 Pfam Armadillo/beta-catenin-like repeat 732 759 IPR000225 GO:0005515
Cma05g00970 862 CDD RING-Ubox_PUB 34 79 IPR045210 -
Cma05g00970 862 SUPERFAMILY ARM repeat 498 849 IPR016024 -
Cma05g00970 862 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 311 - -
Cma05g00970 862 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Cma05g00970 862 SUPERFAMILY RING/U-box 24 111 - -
Cma05g00970 862 SMART arm_5 720 761 IPR000225 GO:0005515
Cma05g00970 862 SMART arm_5 495 535 IPR000225 GO:0005515
Cma05g00970 862 SMART arm_5 394 439 IPR000225 GO:0005515
Cma05g00970 862 SMART arm_5 139 179 IPR000225 GO:0005515
Cma05g00970 862 SMART arm_5 181 221 IPR000225 GO:0005515
Cma05g00970 862 SMART arm_5 354 393 IPR000225 GO:0005515
Cma05g00970 862 SUPERFAMILY ARM repeat 133 542 IPR016024 -
Cma05g00970 862 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Cma05g00970 862 Gene3D - 622 854 IPR011989 -
Cma05g00970 862 Gene3D - 315 535 IPR011989 -
Cma05g00970 862 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Cma05g00970 862 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 311 - -
Cma05g00970 862 Coils Coil 253 273 - -
Cma05g00970 862 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 336 859 - -
Cma05g00970 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 107 IPR013083 -
Cma05g00970 862 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 336 859 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00970 Cma-Chr5:7829293 Cma18g01080 Cma-Chr18:8910909 3.45E-120 dispersed
Cma05g00970 Cma-Chr5:7829293 Cma04g01345 Cma-Chr4:6866473 1.49E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00970 - - bhj:120075341 1385.93