Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00975 ATGGGTTGCTTTTCTTGTATTAATCCTCGTACTAAAGATGGAAGCAGGGTGGAAATTGATAGTTCTGTTCGATTTGAATCCCGGAATTCTGTTAATTCTTCAGGTTCGAAGGGGAAAGAAGATCAGGTCATCAGTGAAAGCTGTTCAAAGGGGGGTGTAGCTGCTCGTAGTTTCACGTTCCGTGAACTCGCCACAGCTACAAGGGGTTTCAAGGAAGTGAATTTGCTTGGGGAGGGTGGTTTTGGACGCGTCTATAAAGGACGTTTGGAGTCGGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGCCTTCAAGGCTTTCAGGAGTTCATTGTGGAGGTTCTCATGTTGAGCCTGTTGCACCATGCCAATCTTGTCACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTCTATGAGTACATGCCTATGGGAAGCCTGGAAGGTCATCTTTTTGACTATAATCATATACATGGAATATGGAGGGACCTGGCCCAACTTTGTCCAGGACCAAGTTGGCCGTTGAATTGGGTGAATCAGCCTAGCGATTACGATTTGAATTCTGACAAAAAGCCACTGAGTTGGAATACAAGGATCAAGATTGCAGTCGCTGCTGCCCGAGGCCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATACCGTGACTTGAAGTCGGCTAATATCTTATTGGACAATGATTTCAATCCTAAGCTTTCAGATTTCGGGCTAGCTAAATTAGGACCTGTTGGTGACAATACTCACGTTTCAACGAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTATGCCATGAGCGGCAAATTAACCCTTAAATCCGATATTTACAGCTTTGGTGTGGTTATGCTCGAGCTTATTACGGGGCGCAGGGTTATTGATTCTAAAAGGAAACCAGGGGAACAGAACCTAGTTGTTTGGTCTCGTCCTTTACTTAAGGATCGCAGAAAGTTCGTGCAATTAGTCGATCCCCTGTTGGAAGGACACTTCCCACTTCGTTGTTTGCAACACGCCGTTGCGATTACTGCAATGTGTCTTCAGGAACAGCCGTCGTTTCGCCCTCTTATTAGTGATATTGTTGTAGCTCTCGAGTATTTGGTTTCTCAGAGTTATTTACAAGAACTACGCCATGTTAAGATTCTCGGTTCATCACAATTATCACCTTCACAACATAATGAAGACATCAATGCCCAAGAATCAGGGATTCCCTGA 1248 44.47 MGCFSCINPRTKDGSRVEIDSSVRFESRNSVNSSGSKGKEDQVISESCSKGGVAARSFTFRELATATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHANLVTLIGYCTDGDQRLLVYEYMPMGSLEGHLFDYNHIHGIWRDLAQLCPGPSWPLNWVNQPSDYDLNSDKKPLSWNTRIKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVMLELITGRRVIDSKRKPGEQNLVVWSRPLLKDRRKFVQLVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEYLVSQSYLQELRHVKILGSSQLSPSQHNEDINAQESGIP 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7870534 7873951 + CmaCh05G009750.1 Cma05g00975 295093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00975 415 PANTHER OS07G0668900 PROTEIN 26 159 - -
Cma05g00975 415 PANTHER OS07G0668900 PROTEIN 188 393 - -
Cma05g00975 415 Gene3D Phosphorylase Kinase; domain 1 41 145 - -
Cma05g00975 415 Gene3D Transferase(Phosphotransferase) domain 1 187 393 - -
Cma05g00975 415 SUPERFAMILY Protein kinase-like (PK-like) 56 392 IPR011009 -
Cma05g00975 415 CDD STKc_IRAK 76 376 - -
Cma05g00975 415 ProSiteProfiles Protein kinase domain profile. 70 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00975 415 SMART serkin_6 70 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma05g00975 415 ProSitePatterns Protein kinases ATP-binding region signature. 76 98 IPR017441 GO:0005524
Cma05g00975 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Cma05g00975 415 Pfam Protein tyrosine and serine/threonine kinase 74 374 IPR001245 GO:0004672|GO:0006468
Cma05g00975 415 PANTHER OS07G0668900 PROTEIN 26 159 - -
Cma05g00975 415 PANTHER OS07G0668900 PROTEIN 188 393 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00975 Cma09g00051 CCT
Cma01g02016 Cma05g00975 CCT
Cma05g00975 Cma09g00051 ECH
Cma01g02016 Cma05g00975 ECH
Cma05g00975 Cma12g00680 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00975 Cma-Chr5:7870534 Cma09g00051 Cma-Chr9:217016 0 dispersed
Cma01g02016 Cma-Chr1:12910712 Cma05g00975 Cma-Chr5:7870534 0 wgd
Cma12g00680 Cma-Chr12:3678680 Cma05g00975 Cma-Chr5:7870534 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68589 PF07714 PK_Tyr_Ser-Thr 8.60E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00975 - - csv:101217131 623.624