Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00991 ATGGGCTGCGCTTCCTCCAAGCTCGACAATCTTCCGGCGGTGGCTCTTTGCCGTGACCGCTGCAAATTCCTTGACCAAGCTCTCGGTTTTACCCATTCCCTTATTGATTCCCACTCTGCTTATGCTGATTCACTCAACAAAGTCGCCTCCGCTCTCCGCCGTTTGTTTGACCAAGACGGTGATAACGGCGGCGGTAGCGATTTGAAAAGCCCTCCACCGCCGCCTGCCGCTCCTTCATTGGAGCGATCTGATTCTGATTCCGATTCCGACTCCGACTCCGATTCCGATTCGGAATCGGAAGATGAAGAAGATGGGTGTTGTTTAACACATGAAAAACCACGATCTCCCCAGATTGGAAACTTAATGTTCTCGAATTACGATTCGGCAAGGGGACAACCGCCGCCGCCACCGCCGACTGGCTCATCGTGGGATTTCTTTAATTTCTTCGAAACCTACGAGAGATACGAACAACCCAATTTCAATTGGGACCCAGATCAAAAACCAGGAACAACAAGAGTTGTAACGAACAAGAAGAAGAAGAAGAAACCGCCGGTGGTGGCTCCGCCGGAGAAATTAAACCAACCGGAAAAGAAAATCGATGAATCAAAAATGGGTGTCGTGGATTTAATGACAGAAATCAAGGGTTCGTTTGAAAAAGCATCTGAATCCAGCAACTCCATCTCCAAGCTGCTTTCTTATGGCCAAAGAATGAGTTTCTGTAAAGATTCAAGAACAAGCTCTCGAGGGCTGCTATCTACCTTGAAGAAGCTCTGTATTTGGGAGCAGAAACTGTACCTGGAAGTGAAGGCTTTGGAGAGATTACGTCTGATTCTTGAAAAGAAATGTCGGCAGCTGAAGAATTTGGTGGAGAAGAATGCCGATAATCGGAAAATTGATTCAGTTCGTTGCTCGATCAGAAATTTATCGATCAAATTGAATGTTTCAATTCAGGTGGTTGATCGGATTTCGATCACCATTAGTAAGCTGAGGGATGAAGAATTCTTGGCAGAAATGAATGAATTGATTCATGGATTACAGAGCATGTGGAAAGCCATGTCGGAAGCTCACAAGCAGCAAACCCAAGCATTAACGGACGCCAAACCGTTCGAATCAGTCCTCAACGGCGCCTTGGACGACGCGCATCTGGAAGCCGCCATGGATTTAAAGCTCGAGCTCGAGAATTGGAGATCAAATTTCGTGAACTTAATCGCCACGCAAAAGGATTGCATCAAAGCCCTCAACGGTTGGCTACTCCGGTGTCTATTACACGAACCCGAGCCGGAAGAAACCCCGAATGGCGGCTGTCCGCCGCCATTCTCTCCGGCGAGAATCGGTGCTCCTCCTGTATTTGTAATAGCGTACCTTTGGTCCGACACAGCCGAGAAATTCTCCGACAAGGATGTCTCTGAGGCTATACAGGGGGTGGTGTCGAAGTTGGATGAGGCGCTGGAGCAGCAGAGTTGGGATTTGCAGAGATTGTCGTTGGGGAACAGAGATTTGGAGAAGAAGATTAAGGCGAAGAAGATGAATCAAGAAATTGAGGAGAAGACAACGGCGGCGGTGGCGGCGGGGACTGTGCATAAAGTGGGCAAGTTTAATGGGTGTGAGATTCAACAGGGGGTGAGGCAGGTTTTTGTGGGGTTGACGAGGTTTTGTGGGGACTCCATTGCAGCATACGAGGAGCTCTGTTCTTCAGCCATAGCTCAGAGCCAGTCAGGTCCGCCATAG 1728 48.73 MGCASSKLDNLPAVALCRDRCKFLDQALGFTHSLIDSHSAYADSLNKVASALRRLFDQDGDNGGGSDLKSPPPPPAAPSLERSDSDSDSDSDSDSDSESEDEEDGCCLTHEKPRSPQIGNLMFSNYDSARGQPPPPPPTGSSWDFFNFFETYERYEQPNFNWDPDQKPGTTRVVTNKKKKKKPPVVAPPEKLNQPEKKIDESKMGVVDLMTEIKGSFEKASESSNSISKLLSYGQRMSFCKDSRTSSRGLLSTLKKLCIWEQKLYLEVKALERLRLILEKKCRQLKNLVEKNADNRKIDSVRCSIRNLSIKLNVSIQVVDRISITISKLRDEEFLAEMNELIHGLQSMWKAMSEAHKQQTQALTDAKPFESVLNGALDDAHLEAAMDLKLELENWRSNFVNLIATQKDCIKALNGWLLRCLLHEPEPEETPNGGCPPPFSPARIGAPPVFVIAYLWSDTAEKFSDKDVSEAIQGVVSKLDEALEQQSWDLQRLSLGNRDLEKKIKAKKMNQEIEEKTTAAVAAGTVHKVGKFNGCEIQQGVRQVFVGLTRFCGDSIAAYEELCSSAIAQSQSGPP 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7951813 7954212 + CmaCh05G009910.1 Cma05g00991 295109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00991 575 Pfam Protein of unknown function (DUF632) 241 479 IPR006867 -
Cma05g00991 575 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
Cma05g00991 575 Coils Coil 490 510 - -
Cma05g00991 575 PANTHER UNCHARACTERIZED 240 568 - -
Cma05g00991 575 PANTHER UNCHARACTERIZED 1 159 - -
Cma05g00991 575 PANTHER UNCHARACTERIZED 174 243 - -
Cma05g00991 575 PANTHER F5M15.15 1 159 - -
Cma05g00991 575 PANTHER F5M15.15 174 243 - -
Cma05g00991 575 PANTHER F5M15.15 240 568 - -
Cma05g00991 575 Coils Coil 268 291 - -
Cma05g00991 575 MobiDBLite consensus disorder prediction 56 143 - -
Cma05g00991 575 MobiDBLite consensus disorder prediction 87 104 - -
Cma05g00991 575 MobiDBLite consensus disorder prediction 158 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00991 - - - csv:101213768 843.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00991 Cma-Chr5:7951813 Cma19g00790 Cma-Chr19:7660344 1.34E-13 dispersed
Cma20g00723 Cma-Chr20:3351363 Cma05g00991 Cma-Chr5:7951813 6.60E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g121 . . . . . . . . Cmo05g01009 . . . . . Sed11g0843 . . Bhi04g01560 Tan02g1536 Cmetu03g1244 . Hepe08g1485 . Lcy13g2249 Cla08g00962 . . . . . . . . Cone17ag1442 Cone20ag0035 . . . Cme03g01356 . . . . . . . . . . . . Cma05g00991 Car05g00873 . Cpe11g00800 . . . . . . . . . . . . . . . Lsi08g00802 . Chy03g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012946 0 1 0 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00991 Cma_Chr05 FPKM 1.926291 2.344715 0.212903 0.275046 14.416333 13.018419 14.870221 0.0 0.0 0.0