Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma05g00993 ATGGCCTTCTTTGGACCTTCCTTCTTTTGGTATCCCCTTTTCTTTCCCTCTTTGCAGCCTAAGCTACCAATTCCATTCTTCTCTCCTTCAAAATTCTGTCTTTGGGTCATCTTATTTTGCCTAACCAAACAAGGATATATTATGGGCGATGATGGGGAGATTACACACAATCAACCCATAATCTCAAGGTTTAAAAGGGTCTGTGTTTTTTGTGGGAGTAGTGCTGGCAAGAGAAATTGCTACCGTGAAGCCGCCGTTGAGCTCGCCGGAGAATTGGTCTCAAGGAGATTAGACCTTGTTTATGGTGGAGGAAGTATTGGCTTAATGGGACTTGTCTCTCAAGAGGTTCACAACGGAGGTGGACATGTGATAGGAATAATCCCGAAAACATTGATGCGTAAAGAGATTACTGGGGAAACAGTTGGGGAGGTCCGACCAGTTGCCGACATGCATCAAAGGAAAGCGGAGATGGCCCGCCACTCTGACTGTTTCATTGCCCTCCCAGGTGGATATGGAACATTGGAAGAGCTCCTCGAAGTCATAACGTGGGCCCAGCTCGGTATCCACGACAAACCGGTGGGTTTGCTTAACGTTCATGGTTATTACAACTCGCTTCTCTCCTTCATCGACAAGGCTGTGGATGACGGCTTTATCATGCCATCTCAACGTAGTATCATCGTCTCTGCCCCTAACGCTAAGGAGCTTGTTCAAAAGCTCGAGGAATACGTGCCCGATCATGACGGCGTCATGGCAAAGGTCAAATGGGAAGATGAACAGATGGAGCTGAACGTCAGTTTGCAGACAGAATTCTACCGGTGA 819 47.37 MAFFGPSFFWYPLFFPSLQPKLPIPFFSPSKFCLWVILFCLTKQGYIMGDDGEITHNQPIISRFKRVCVFCGSSAGKRNCYREAAVELAGELVSRRLDLVYGGGSIGLMGLVSQEVHNGGGHVIGIIPKTLMRKEITGETVGEVRPVADMHQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVHGYYNSLLSFIDKAVDDGFIMPSQRSIIVSAPNAKELVQKLEEYVPDHDGVMAKVKWEDEQMELNVSLQTEFYR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7967946 7970623 - CmaCh05G009930.1 Cma05g00993 295111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma05g00993 272 Pfam Possible lysine decarboxylase 109 239 IPR031100 -
Cma05g00993 272 TIGRFAM TIGR00730: TIGR00730 family protein 65 242 IPR005269 GO:0009691|GO:0016787
Cma05g00993 272 Gene3D - 54 241 - -
Cma05g00993 272 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 60 270 - -
Cma05g00993 272 SUPERFAMILY MCP/YpsA-like 63 242 - -
Cma05g00993 272 PANTHER LOG FAMILY PROTEIN YJL055W 60 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma05g00993 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101207180 412.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00282 Cma-Chr2:1303292 Cma05g00993 Cma-Chr5:7967946 6.01E-120 dispersed
Cma05g00993 Cma-Chr5:7967946 Cma19g00782 Cma-Chr19:7629126 8.40E-127 dispersed
Cma20g00728 Cma-Chr20:3380247 Cma05g00993 Cma-Chr5:7967946 1.11E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g124 . . . . . . . . Cmo05g01011 . . . . . . . . Bhi04g01557 . . . . . . Cla08g00964 . . . . . . . . . . . . . Cme03g01358 Blo17g00713 . Bda08g01175 . . . . . . . . . Cma05g00993 Car05g00875 . . . . . . . . . . . . . . . . . Lsi08g00804 . Chy03g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma05g00993 Cma_Chr05 FPKM 2.025057 3.054775 10.025846 10.484569 3.571502 4.780788 3.019032 1.079521 0.741349 0.0